Hb_003813_020

Information

Type -
Description -
Location Contig3813: 3996-9925
Sequence    

Annotation

kegg
ID cic:CICLE_v10012146mg
description hypothetical protein
nr
ID XP_012077983.1
description PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
swissprot
ID Q8BVQ5
description Protein phosphatase methylesterase 1 OS=Mus musculus GN=Ppme1 PE=1 SV=5
trembl
ID A0A067KA10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12988 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38618: 3752-3892 , PASA_asmbl_38619: 9101-9906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_020 0.0 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
2 Hb_001790_030 0.1138370844 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
3 Hb_007534_050 0.1194818937 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000112_060 0.1214853408 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
5 Hb_000164_140 0.122024184 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_001946_160 0.1222519765 - - putative chaperon P13.9 [Castanea sativa]
7 Hb_158845_050 0.1222814833 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
8 Hb_027472_100 0.1268198667 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
9 Hb_004440_060 0.1356864743 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_055619_010 0.1381120601 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
11 Hb_005276_010 0.1381573909 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
12 Hb_001898_180 0.1438109214 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
13 Hb_005846_030 0.1444958943 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
14 Hb_005127_030 0.1445194695 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_002053_010 0.1454721036 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
16 Hb_000028_110 0.1466048817 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
17 Hb_000638_160 0.1482397897 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
18 Hb_008695_200 0.1487600377 - - Protein grpE, putative [Ricinus communis]
19 Hb_001789_200 0.1505301621 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
20 Hb_001712_020 0.1505653263 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_020 Hb_003813_020 Hb_001790_030 Hb_001790_030 Hb_003813_020--Hb_001790_030 Hb_007534_050 Hb_007534_050 Hb_003813_020--Hb_007534_050 Hb_000112_060 Hb_000112_060 Hb_003813_020--Hb_000112_060 Hb_000164_140 Hb_000164_140 Hb_003813_020--Hb_000164_140 Hb_001946_160 Hb_001946_160 Hb_003813_020--Hb_001946_160 Hb_158845_050 Hb_158845_050 Hb_003813_020--Hb_158845_050 Hb_000984_240 Hb_000984_240 Hb_001790_030--Hb_000984_240 Hb_003349_030 Hb_003349_030 Hb_001790_030--Hb_003349_030 Hb_005846_030 Hb_005846_030 Hb_001790_030--Hb_005846_030 Hb_001712_020 Hb_001712_020 Hb_001790_030--Hb_001712_020 Hb_000254_140 Hb_000254_140 Hb_001790_030--Hb_000254_140 Hb_004440_060 Hb_004440_060 Hb_007534_050--Hb_004440_060 Hb_055619_010 Hb_055619_010 Hb_007534_050--Hb_055619_010 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_001578_020 Hb_001578_020 Hb_007534_050--Hb_001578_020 Hb_002811_010 Hb_002811_010 Hb_007534_050--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_007534_050--Hb_000317_260 Hb_010128_020 Hb_010128_020 Hb_000112_060--Hb_010128_020 Hb_036790_120 Hb_036790_120 Hb_000112_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000112_060--Hb_007426_170 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_000152_480 Hb_000152_480 Hb_000112_060--Hb_000152_480 Hb_003029_020 Hb_003029_020 Hb_000112_060--Hb_003029_020 Hb_005725_220 Hb_005725_220 Hb_000164_140--Hb_005725_220 Hb_000164_140--Hb_005276_010 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_000164_140--Hb_005846_030 Hb_029920_030 Hb_029920_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_025194_060 Hb_025194_060 Hb_001946_160--Hb_025194_060 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_158845_050--Hb_000028_110 Hb_000613_110 Hb_000613_110 Hb_158845_050--Hb_000613_110 Hb_002304_080 Hb_002304_080 Hb_158845_050--Hb_002304_080 Hb_000608_380 Hb_000608_380 Hb_158845_050--Hb_000608_380 Hb_005731_160 Hb_005731_160 Hb_158845_050--Hb_005731_160 Hb_158845_050--Hb_006538_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.581811 0.427647 2.84537 1.49281 0.463858 1.83129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07053 3.09115 0.678944 1.11917 5.4924

CAGE analysis