Hb_003813_060

Information

Type -
Description -
Location Contig3813: 34526-38710
Sequence    

Annotation

kegg
ID rcu:RCOM_1056060
description hypothetical protein
nr
ID XP_002531309.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZ90
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1056060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004223_140 0.1220818668 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_006711_090 0.1311125862 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
4 Hb_004032_210 0.1412785591 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003894_030 0.1442376775 - - plant sec1, putative [Ricinus communis]
6 Hb_011828_040 0.1444925361 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
7 Hb_000940_210 0.1448107144 - - cyclophilin [Hevea brasiliensis]
8 Hb_018845_010 0.1450013197 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
9 Hb_188281_030 0.1465406097 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
10 Hb_002028_190 0.1471805964 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
11 Hb_001902_200 0.1483846802 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
12 Hb_000581_030 0.1514292402 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002007_320 0.1517730522 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
14 Hb_000062_090 0.1533265117 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
15 Hb_000935_040 0.1541474453 - - Uncharacterized protein isoform 2 [Theobroma cacao]
16 Hb_002374_270 0.1551470166 - - conserved hypothetical protein [Ricinus communis]
17 Hb_124677_030 0.1563534767 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
18 Hb_000062_530 0.1567187045 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
19 Hb_003929_180 0.1584866809 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
20 Hb_003964_080 0.1593146233 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_060 Hb_003813_060 Hb_004223_140 Hb_004223_140 Hb_003813_060--Hb_004223_140 Hb_006711_090 Hb_006711_090 Hb_003813_060--Hb_006711_090 Hb_004032_210 Hb_004032_210 Hb_003813_060--Hb_004032_210 Hb_003894_030 Hb_003894_030 Hb_003813_060--Hb_003894_030 Hb_011828_040 Hb_011828_040 Hb_003813_060--Hb_011828_040 Hb_000940_210 Hb_000940_210 Hb_003813_060--Hb_000940_210 Hb_003929_180 Hb_003929_180 Hb_004223_140--Hb_003929_180 Hb_002028_190 Hb_002028_190 Hb_004223_140--Hb_002028_190 Hb_004223_140--Hb_004032_210 Hb_018845_010 Hb_018845_010 Hb_004223_140--Hb_018845_010 Hb_000012_080 Hb_000012_080 Hb_004223_140--Hb_000012_080 Hb_006351_020 Hb_006351_020 Hb_004223_140--Hb_006351_020 Hb_002007_320 Hb_002007_320 Hb_006711_090--Hb_002007_320 Hb_000062_090 Hb_000062_090 Hb_006711_090--Hb_000062_090 Hb_000935_040 Hb_000935_040 Hb_006711_090--Hb_000935_040 Hb_001904_050 Hb_001904_050 Hb_006711_090--Hb_001904_050 Hb_004158_020 Hb_004158_020 Hb_006711_090--Hb_004158_020 Hb_188281_030 Hb_188281_030 Hb_006711_090--Hb_188281_030 Hb_004032_210--Hb_003929_180 Hb_001545_130 Hb_001545_130 Hb_004032_210--Hb_001545_130 Hb_004032_210--Hb_006351_020 Hb_000003_030 Hb_000003_030 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060 Hb_003740_020 Hb_003740_020 Hb_003894_030--Hb_003740_020 Hb_013405_070 Hb_013405_070 Hb_003894_030--Hb_013405_070 Hb_002374_270 Hb_002374_270 Hb_003894_030--Hb_002374_270 Hb_029253_010 Hb_029253_010 Hb_003894_030--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_003894_030--Hb_000000_480 Hb_000527_080 Hb_000527_080 Hb_003894_030--Hb_000527_080 Hb_000526_010 Hb_000526_010 Hb_011828_040--Hb_000526_010 Hb_002205_140 Hb_002205_140 Hb_011828_040--Hb_002205_140 Hb_004155_020 Hb_004155_020 Hb_011828_040--Hb_004155_020 Hb_001232_090 Hb_001232_090 Hb_011828_040--Hb_001232_090 Hb_000406_030 Hb_000406_030 Hb_011828_040--Hb_000406_030 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14253 1.41945 6.88372 10.0426 0.411496 1.05494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.626784 2.23738 2.23936 3.53466 2.02271

CAGE analysis