Hb_003813_100

Information

Type -
Description -
Location Contig3813: 65362-68176
Sequence    

Annotation

kegg
ID csv:101218171
description proteasome subunit beta type-3-A-like
nr
ID XP_004149805.1
description PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
swissprot
ID O65084
description Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
trembl
ID A0A0A0KDS4
description Proteasome subunit beta type OS=Cucumis sativus GN=Csa_6G382910 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-3-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_100 0.0 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
2 Hb_000085_280 0.1089065319 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
3 Hb_013405_130 0.1110686622 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
4 Hb_002290_060 0.1246215384 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
5 Hb_003507_040 0.1354592119 - - hypothetical protein RCOM_1685970 [Ricinus communis]
6 Hb_077219_010 0.1370258911 - - conserved hypothetical protein [Ricinus communis]
7 Hb_035524_030 0.1381735522 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000186_010 0.1407130323 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
9 Hb_001252_170 0.1409487337 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
10 Hb_027445_060 0.1417769505 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
11 Hb_013479_020 0.1430459724 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
12 Hb_001477_010 0.1459235583 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
13 Hb_019654_070 0.1519967337 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
14 Hb_010298_010 0.152228551 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
15 Hb_004072_010 0.1529780374 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
16 Hb_002942_030 0.1575885156 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
17 Hb_006198_050 0.1577036999 - - protein with unknown function [Ricinus communis]
18 Hb_000155_070 0.1579051228 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
19 Hb_004242_100 0.158775764 - - RNA binding protein, putative [Ricinus communis]
20 Hb_019613_020 0.1590220601 - - phospholipase C, putative [Ricinus communis]

Gene co-expression network

sample Hb_003813_100 Hb_003813_100 Hb_000085_280 Hb_000085_280 Hb_003813_100--Hb_000085_280 Hb_013405_130 Hb_013405_130 Hb_003813_100--Hb_013405_130 Hb_002290_060 Hb_002290_060 Hb_003813_100--Hb_002290_060 Hb_003507_040 Hb_003507_040 Hb_003813_100--Hb_003507_040 Hb_077219_010 Hb_077219_010 Hb_003813_100--Hb_077219_010 Hb_035524_030 Hb_035524_030 Hb_003813_100--Hb_035524_030 Hb_000085_280--Hb_035524_030 Hb_000085_280--Hb_002290_060 Hb_000085_280--Hb_013405_130 Hb_005288_120 Hb_005288_120 Hb_000085_280--Hb_005288_120 Hb_019613_020 Hb_019613_020 Hb_000085_280--Hb_019613_020 Hb_000186_010 Hb_000186_010 Hb_000085_280--Hb_000186_010 Hb_010261_020 Hb_010261_020 Hb_013405_130--Hb_010261_020 Hb_013405_130--Hb_005288_120 Hb_013405_130--Hb_000186_010 Hb_000042_230 Hb_000042_230 Hb_013405_130--Hb_000042_230 Hb_000028_030 Hb_000028_030 Hb_013405_130--Hb_000028_030 Hb_002290_060--Hb_035524_030 Hb_001477_010 Hb_001477_010 Hb_002290_060--Hb_001477_010 Hb_002955_010 Hb_002955_010 Hb_002290_060--Hb_002955_010 Hb_002290_060--Hb_077219_010 Hb_024714_030 Hb_024714_030 Hb_002290_060--Hb_024714_030 Hb_013479_020 Hb_013479_020 Hb_003507_040--Hb_013479_020 Hb_027445_060 Hb_027445_060 Hb_003507_040--Hb_027445_060 Hb_000155_080 Hb_000155_080 Hb_003507_040--Hb_000155_080 Hb_019654_070 Hb_019654_070 Hb_003507_040--Hb_019654_070 Hb_000172_610 Hb_000172_610 Hb_003507_040--Hb_000172_610 Hb_000565_020 Hb_000565_020 Hb_077219_010--Hb_000565_020 Hb_077219_010--Hb_000085_280 Hb_001252_170 Hb_001252_170 Hb_077219_010--Hb_001252_170 Hb_077219_010--Hb_001477_010 Hb_000856_100 Hb_000856_100 Hb_077219_010--Hb_000856_100 Hb_035524_030--Hb_019613_020 Hb_035524_030--Hb_005288_120 Hb_000671_100 Hb_000671_100 Hb_035524_030--Hb_000671_100 Hb_035524_030--Hb_024714_030 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50116 0.0951547 0.184643 0.255857 3.75632 9.81948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31107 1.59423 2.14147 0.879658 0.334704

CAGE analysis