Hb_003813_120

Information

Type -
Description -
Location Contig3813: 72397-77808
Sequence    

Annotation

kegg
ID rcu:RCOM_1726570
description zinc finger protein, putative
nr
ID XP_002516736.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q39265
description Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1
trembl
ID B9RSL7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1726570 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38635: 72689-72934 , PASA_asmbl_38636: 73655-75131 , PASA_asmbl_38637: 74135-75014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_120 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000347_110 0.0951156154 - - BnaA05g25330D [Brassica napus]
3 Hb_003626_040 0.1248202382 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
4 Hb_006717_070 0.1342972771 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
5 Hb_000227_040 0.1369733618 - - Stem-specific protein TSJT1, putative [Ricinus communis]
6 Hb_000702_060 0.1417042008 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001500_070 0.1421713387 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004129_050 0.1426297777 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
9 Hb_000343_100 0.1469702138 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
10 Hb_012545_090 0.147159478 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
11 Hb_000181_020 0.1474386729 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
12 Hb_009732_020 0.1475264093 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
13 Hb_000094_370 0.1482958318 - - -
14 Hb_004041_100 0.1534033239 - - -
15 Hb_000041_060 0.1567396422 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_011360_060 0.1582503005 - - glycogen phosphorylase, putative [Ricinus communis]
17 Hb_002539_010 0.1607792086 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
18 Hb_000173_260 0.1665924568 - - hypothetical protein L484_010046 [Morus notabilis]
19 Hb_006846_120 0.1667230129 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
20 Hb_127886_010 0.1726030983 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_120 Hb_003813_120 Hb_000347_110 Hb_000347_110 Hb_003813_120--Hb_000347_110 Hb_003626_040 Hb_003626_040 Hb_003813_120--Hb_003626_040 Hb_006717_070 Hb_006717_070 Hb_003813_120--Hb_006717_070 Hb_000227_040 Hb_000227_040 Hb_003813_120--Hb_000227_040 Hb_000702_060 Hb_000702_060 Hb_003813_120--Hb_000702_060 Hb_001500_070 Hb_001500_070 Hb_003813_120--Hb_001500_070 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_004041_100 Hb_004041_100 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_000347_110--Hb_003626_040 Hb_003626_040--Hb_006717_070 Hb_003626_040--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_003626_040--Hb_000684_360 Hb_003626_040--Hb_001500_070 Hb_127886_010 Hb_127886_010 Hb_006717_070--Hb_127886_010 Hb_009732_020 Hb_009732_020 Hb_006717_070--Hb_009732_020 Hb_000395_220 Hb_000395_220 Hb_006717_070--Hb_000395_220 Hb_000362_110 Hb_000362_110 Hb_006717_070--Hb_000362_110 Hb_000227_040--Hb_009732_020 Hb_011287_010 Hb_011287_010 Hb_000227_040--Hb_011287_010 Hb_012545_090 Hb_012545_090 Hb_000227_040--Hb_012545_090 Hb_000227_040--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000227_040--Hb_001780_150 Hb_012760_040 Hb_012760_040 Hb_000227_040--Hb_012760_040 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000702_060--Hb_000347_110 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_001500_070--Hb_004041_100 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_000625_030 Hb_000625_030 Hb_001500_070--Hb_000625_030 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.762975 1.5358 1.19559 1.5459 0.639485 0.562482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.459073 0.903054 0.311931 6.985 1.49508

CAGE analysis