Hb_003814_030

Information

Type -
Description -
Location Contig3814: 17767-19570
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07500g
description POPTRDRAFT_757027; integral membrane family protein
nr
ID XP_012069988.1
description PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FGL0
description WAT1-related protein At5g47470 OS=Arabidopsis thaliana GN=At5g47470 PE=3 SV=1
trembl
ID A0A067KUJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03407 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g47470-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38648: 17150-17566 , PASA_asmbl_38649: 18206-18467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003814_030 0.0 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
2 Hb_000136_190 0.1035010848 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
3 Hb_000330_160 0.1463010338 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
4 Hb_001508_020 0.1467492347 - - myosin vIII, putative [Ricinus communis]
5 Hb_004657_090 0.1507331463 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
6 Hb_005144_030 0.1594838095 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
7 Hb_006508_030 0.1620624616 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
8 Hb_018202_050 0.162692026 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
9 Hb_003376_260 0.1638045659 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
10 Hb_002301_310 0.167199411 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
11 Hb_003894_040 0.16889878 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_000062_060 0.1719792472 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
13 Hb_002742_080 0.176251135 - - unknown [Populus trichocarpa]
14 Hb_074197_020 0.1781937572 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
15 Hb_001369_350 0.1804330178 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
16 Hb_007481_030 0.1846324432 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
17 Hb_002814_060 0.1847553744 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
18 Hb_001031_040 0.1859144192 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000630_030 0.1869500519 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
20 Hb_143960_010 0.1889145339 - - -

Gene co-expression network

sample Hb_003814_030 Hb_003814_030 Hb_000136_190 Hb_000136_190 Hb_003814_030--Hb_000136_190 Hb_000330_160 Hb_000330_160 Hb_003814_030--Hb_000330_160 Hb_001508_020 Hb_001508_020 Hb_003814_030--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_003814_030--Hb_004657_090 Hb_005144_030 Hb_005144_030 Hb_003814_030--Hb_005144_030 Hb_006508_030 Hb_006508_030 Hb_003814_030--Hb_006508_030 Hb_002370_040 Hb_002370_040 Hb_000136_190--Hb_002370_040 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_000136_190--Hb_001508_020 Hb_000136_190--Hb_004657_090 Hb_000330_160--Hb_005144_030 Hb_002742_070 Hb_002742_070 Hb_000330_160--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_000330_160--Hb_011953_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_000021_020 Hb_000021_020 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050 Hb_004657_090--Hb_001508_020 Hb_003376_260 Hb_003376_260 Hb_004657_090--Hb_003376_260 Hb_002681_170 Hb_002681_170 Hb_004657_090--Hb_002681_170 Hb_004374_080 Hb_004374_080 Hb_004657_090--Hb_004374_080 Hb_000091_060 Hb_000091_060 Hb_004657_090--Hb_000091_060 Hb_012404_070 Hb_012404_070 Hb_004657_090--Hb_012404_070 Hb_002815_060 Hb_002815_060 Hb_005144_030--Hb_002815_060 Hb_005260_040 Hb_005260_040 Hb_005144_030--Hb_005260_040 Hb_006501_020 Hb_006501_020 Hb_005144_030--Hb_006501_020 Hb_005144_030--Hb_002742_070 Hb_005144_030--Hb_001369_350 Hb_002814_060 Hb_002814_060 Hb_006508_030--Hb_002814_060 Hb_006508_030--Hb_018202_050 Hb_000384_080 Hb_000384_080 Hb_006508_030--Hb_000384_080 Hb_006508_030--Hb_001369_350 Hb_012528_020 Hb_012528_020 Hb_006508_030--Hb_012528_020 Hb_000261_100 Hb_000261_100 Hb_006508_030--Hb_000261_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50157 4.43961 3.82095 5.58897 5.19125 8.03479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.359338 0.494293 0 2.91194 2.35114

CAGE analysis