Hb_003835_070

Information

Type -
Description -
Location Contig3835: 89027-96031
Sequence    

Annotation

kegg
ID rcu:RCOM_0020930
description hypothetical protein
nr
ID XP_012081684.1
description PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T5K0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0020930 PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor tfiid subunit isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38666: 89128-95840 , PASA_asmbl_38667: 91025-91353 , PASA_asmbl_38668: 90505-90637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003835_070 0.0 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
2 Hb_002205_250 0.0471879431 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
3 Hb_002217_170 0.0480327013 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
4 Hb_000614_210 0.0486594363 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
5 Hb_105105_010 0.0533957149 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
6 Hb_012194_030 0.0544274597 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_011618_090 0.0576438553 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
8 Hb_162275_050 0.0595302748 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
9 Hb_000012_260 0.0595559886 - - Far upstream element-binding 2 [Gossypium arboreum]
10 Hb_001430_080 0.0611688942 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
11 Hb_002234_090 0.0630083833 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
12 Hb_003866_080 0.0637357842 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
13 Hb_010712_050 0.0650141298 - - PREDICTED: protein ELC-like [Jatropha curcas]
14 Hb_000107_660 0.0651921019 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_005542_140 0.0652356448 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
16 Hb_000099_040 0.0655101018 - - unnamed protein product [Coffea canephora]
17 Hb_001089_050 0.0662506882 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
18 Hb_003464_090 0.0665615132 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
19 Hb_000317_370 0.0667836563 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
20 Hb_000011_100 0.0670724907 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]

Gene co-expression network

sample Hb_003835_070 Hb_003835_070 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_002205_250--Hb_105105_010 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210 Hb_001195_530 Hb_001195_530 Hb_002217_170--Hb_001195_530 Hb_000317_370 Hb_000317_370 Hb_002217_170--Hb_000317_370 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_002217_170--Hb_105105_010 Hb_002217_170--Hb_000614_210 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_000614_210--Hb_105105_010 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_105105_010--Hb_001195_530 Hb_105105_010--Hb_001716_020 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_000329_370 Hb_000329_370 Hb_012194_030--Hb_000329_370 Hb_012194_030--Hb_162275_050 Hb_002085_030 Hb_002085_030 Hb_012194_030--Hb_002085_030 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090 Hb_011618_090--Hb_000317_370 Hb_000579_230 Hb_000579_230 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.79593 14.1661 9.50831 7.72407 8.62799 8.36015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40277 6.65353 8.53676 11.1737 8.41228

CAGE analysis