Hb_003835_080

Information

Type -
Description -
Location Contig3835: 108692-112836
Sequence    

Annotation

kegg
ID rcu:RCOM_0020950
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.25)
nr
ID XP_012081682.1
description PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
swissprot
ID Q8H1D6
description Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1
trembl
ID A0A067K0P7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18711 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor-like cytosolic serine threonine-protein kinase rbk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38670: 108755-112823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003835_080 0.0 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
2 Hb_000012_330 0.089198894 - - pollen specific protein sf21, putative [Ricinus communis]
3 Hb_002572_040 0.0907458174 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
4 Hb_004696_010 0.0948637508 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
5 Hb_000977_020 0.1010964052 - - beta-hexosaminidase, putative [Ricinus communis]
6 Hb_012484_050 0.1027957497 - - PREDICTED: kinesin KP1 [Jatropha curcas]
7 Hb_000622_050 0.1059148817 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_130 0.1063123804 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
9 Hb_001541_130 0.1064201755 - - GDSL esterase/lipase [Morus notabilis]
10 Hb_001210_060 0.1073183775 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
11 Hb_000031_180 0.1122044869 - - sarcosine oxidase, putative [Ricinus communis]
12 Hb_005725_240 0.1136892216 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
13 Hb_027472_060 0.1144661755 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
14 Hb_005730_060 0.1152128789 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
15 Hb_000417_210 0.1156520996 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001159_230 0.1164591197 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_002066_110 0.116560982 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
18 Hb_005694_160 0.1168333627 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005295_020 0.1174867854 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
20 Hb_002724_010 0.1175189032 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]

Gene co-expression network

sample Hb_003835_080 Hb_003835_080 Hb_000012_330 Hb_000012_330 Hb_003835_080--Hb_000012_330 Hb_002572_040 Hb_002572_040 Hb_003835_080--Hb_002572_040 Hb_004696_010 Hb_004696_010 Hb_003835_080--Hb_004696_010 Hb_000977_020 Hb_000977_020 Hb_003835_080--Hb_000977_020 Hb_012484_050 Hb_012484_050 Hb_003835_080--Hb_012484_050 Hb_000622_050 Hb_000622_050 Hb_003835_080--Hb_000622_050 Hb_000012_330--Hb_000622_050 Hb_012098_160 Hb_012098_160 Hb_000012_330--Hb_012098_160 Hb_000012_330--Hb_012484_050 Hb_005725_240 Hb_005725_240 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_002150_090 Hb_002150_090 Hb_002572_040--Hb_002150_090 Hb_001541_130 Hb_001541_130 Hb_002572_040--Hb_001541_130 Hb_006242_050 Hb_006242_050 Hb_002572_040--Hb_006242_050 Hb_000599_150 Hb_000599_150 Hb_002572_040--Hb_000599_150 Hb_027472_060 Hb_027472_060 Hb_002572_040--Hb_027472_060 Hb_001095_020 Hb_001095_020 Hb_002572_040--Hb_001095_020 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_002724_010 Hb_002724_010 Hb_000977_020--Hb_002724_010 Hb_000627_050 Hb_000627_050 Hb_000977_020--Hb_000627_050 Hb_000212_410 Hb_000212_410 Hb_000977_020--Hb_000212_410 Hb_001098_040 Hb_001098_040 Hb_000977_020--Hb_001098_040 Hb_009421_070 Hb_009421_070 Hb_000977_020--Hb_009421_070 Hb_000703_120 Hb_000703_120 Hb_000977_020--Hb_000703_120 Hb_001951_080 Hb_001951_080 Hb_012484_050--Hb_001951_080 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_012484_050--Hb_001486_280 Hb_000976_400 Hb_000976_400 Hb_000622_050--Hb_000976_400 Hb_004220_010 Hb_004220_010 Hb_000622_050--Hb_004220_010 Hb_000622_050--Hb_012098_160 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.636374 3.13688 19.0108 29.5483 0.390849 0.0832972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.75907 0.235282 0.171523 3.26954 29.3602

CAGE analysis