Hb_003835_090

Information

Type transcription factor
Description TF Family: AP2
Location Contig3835: 114504-118891
Sequence    

Annotation

kegg
ID rcu:RCOM_0021080
description Protein BABY BOOM, putative (EC:1.3.1.74)
nr
ID XP_012081678.1
description PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
swissprot
ID Q52QU2
description AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1
trembl
ID A0A067KD77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18709 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor ail6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38672: 114785-115344 , PASA_asmbl_38673: 117031-117756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003835_090 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
2 Hb_006711_070 0.1595840885 - - hypothetical protein RCOM_1336320 [Ricinus communis]
3 Hb_003305_030 0.1619486537 - - -
4 Hb_055488_020 0.1623136343 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
5 Hb_041895_040 0.1655691233 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012258_020 0.1670332701 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_001486_020 0.169258767 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
8 Hb_073171_090 0.1707844078 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
9 Hb_002431_010 0.1718680917 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
10 Hb_003078_030 0.1723774184 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
11 Hb_000608_280 0.1776600998 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
12 Hb_002701_210 0.180132861 - - Protein COBRA precursor, putative [Ricinus communis]
13 Hb_021443_090 0.1824647777 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
14 Hb_000445_100 0.1854328322 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
15 Hb_000523_030 0.1872495181 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
16 Hb_000134_340 0.1876930389 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
17 Hb_004917_040 0.1877413679 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
18 Hb_001769_110 0.1908405507 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
19 Hb_009393_200 0.1908846813 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
20 Hb_000059_200 0.1911915231 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]

Gene co-expression network

sample Hb_003835_090 Hb_003835_090 Hb_006711_070 Hb_006711_070 Hb_003835_090--Hb_006711_070 Hb_003305_030 Hb_003305_030 Hb_003835_090--Hb_003305_030 Hb_055488_020 Hb_055488_020 Hb_003835_090--Hb_055488_020 Hb_041895_040 Hb_041895_040 Hb_003835_090--Hb_041895_040 Hb_012258_020 Hb_012258_020 Hb_003835_090--Hb_012258_020 Hb_001486_020 Hb_001486_020 Hb_003835_090--Hb_001486_020 Hb_000117_060 Hb_000117_060 Hb_006711_070--Hb_000117_060 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_000134_340 Hb_000134_340 Hb_006711_070--Hb_000134_340 Hb_005096_010 Hb_005096_010 Hb_006711_070--Hb_005096_010 Hb_138585_100 Hb_138585_100 Hb_006711_070--Hb_138585_100 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_002250_050 Hb_002250_050 Hb_003305_030--Hb_002250_050 Hb_003305_030--Hb_041895_040 Hb_000692_210 Hb_000692_210 Hb_003305_030--Hb_000692_210 Hb_000438_090 Hb_000438_090 Hb_003305_030--Hb_000438_090 Hb_171718_020 Hb_171718_020 Hb_003305_030--Hb_171718_020 Hb_164945_010 Hb_164945_010 Hb_003305_030--Hb_164945_010 Hb_002701_210 Hb_002701_210 Hb_055488_020--Hb_002701_210 Hb_055488_020--Hb_003078_030 Hb_000012_210 Hb_000012_210 Hb_055488_020--Hb_000012_210 Hb_001009_090 Hb_001009_090 Hb_055488_020--Hb_001009_090 Hb_055488_020--Hb_005096_010 Hb_000056_300 Hb_000056_300 Hb_055488_020--Hb_000056_300 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_012258_020--Hb_000117_060 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_012258_020--Hb_041895_040 Hb_003637_020 Hb_003637_020 Hb_012258_020--Hb_003637_020 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060 Hb_089140_120 Hb_089140_120 Hb_001486_020--Hb_089140_120 Hb_001221_220 Hb_001221_220 Hb_001486_020--Hb_001221_220 Hb_102291_010 Hb_102291_010 Hb_001486_020--Hb_102291_010 Hb_009545_090 Hb_009545_090 Hb_001486_020--Hb_009545_090 Hb_001911_040 Hb_001911_040 Hb_001486_020--Hb_001911_040 Hb_000991_040 Hb_000991_040 Hb_001486_020--Hb_000991_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.624859 1.59379 1.069 1.56781 0.440551 0.363499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.425451 0.119542 0.224797 0.133563 0.100133

CAGE analysis