Hb_003835_100

Information

Type -
Description -
Location Contig3835: 157421-161463
Sequence    

Annotation

kegg
ID rcu:RCOM_0270640
description ATP binding protein, putative
nr
ID XP_012081674.1
description PREDICTED: putative U-box domain-containing protein 50 [Jatropha curcas]
swissprot
ID Q9FGD7
description Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1
trembl
ID A0A067K425
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18708 PE=4 SV=1
Gene Ontology
ID GO:0004672
description u-box domain-containing protein 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38674: 157308-157927 , PASA_asmbl_38675: 158343-161427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003835_100 0.0 - - PREDICTED: putative U-box domain-containing protein 50 [Jatropha curcas]
2 Hb_090963_010 0.1114436186 - - -
3 Hb_130016_010 0.1565767082 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000922_250 0.1594400995 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000270_120 0.1595411211 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
6 Hb_000021_050 0.1629707414 - - PREDICTED: uncharacterized protein LOC105645238 [Jatropha curcas]
7 Hb_000086_630 0.1639717454 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
8 Hb_011021_050 0.1658837335 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
9 Hb_006501_160 0.1678415608 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
10 Hb_000997_180 0.1689116855 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001105_110 0.1734406252 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012573_040 0.1754858522 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
13 Hb_005273_030 0.1755757618 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_000619_030 0.1779137911 - - unnamed protein product [Vitis vinifera]
15 Hb_002609_080 0.1784205021 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
16 Hb_145022_010 0.1791269145 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
17 Hb_000417_200 0.1806601365 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
18 Hb_004306_120 0.1809477971 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000152_330 0.1820854517 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
20 Hb_001825_060 0.1825259339 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]

Gene co-expression network

sample Hb_003835_100 Hb_003835_100 Hb_090963_010 Hb_090963_010 Hb_003835_100--Hb_090963_010 Hb_130016_010 Hb_130016_010 Hb_003835_100--Hb_130016_010 Hb_000922_250 Hb_000922_250 Hb_003835_100--Hb_000922_250 Hb_000270_120 Hb_000270_120 Hb_003835_100--Hb_000270_120 Hb_000021_050 Hb_000021_050 Hb_003835_100--Hb_000021_050 Hb_000086_630 Hb_000086_630 Hb_003835_100--Hb_000086_630 Hb_000448_050 Hb_000448_050 Hb_090963_010--Hb_000448_050 Hb_000072_170 Hb_000072_170 Hb_090963_010--Hb_000072_170 Hb_000000_230 Hb_000000_230 Hb_090963_010--Hb_000000_230 Hb_001230_030 Hb_001230_030 Hb_090963_010--Hb_001230_030 Hb_002928_140 Hb_002928_140 Hb_090963_010--Hb_002928_140 Hb_000619_030 Hb_000619_030 Hb_130016_010--Hb_000619_030 Hb_000329_100 Hb_000329_100 Hb_130016_010--Hb_000329_100 Hb_000417_200 Hb_000417_200 Hb_130016_010--Hb_000417_200 Hb_000046_580 Hb_000046_580 Hb_130016_010--Hb_000046_580 Hb_011021_050 Hb_011021_050 Hb_130016_010--Hb_011021_050 Hb_004970_170 Hb_004970_170 Hb_130016_010--Hb_004970_170 Hb_145022_010 Hb_145022_010 Hb_000922_250--Hb_145022_010 Hb_011883_020 Hb_011883_020 Hb_000922_250--Hb_011883_020 Hb_003528_050 Hb_003528_050 Hb_000922_250--Hb_003528_050 Hb_001691_200 Hb_001691_200 Hb_000922_250--Hb_001691_200 Hb_004934_050 Hb_004934_050 Hb_000922_250--Hb_004934_050 Hb_002631_210 Hb_002631_210 Hb_000922_250--Hb_002631_210 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000270_120--Hb_000086_630 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_002542_110 Hb_002542_110 Hb_000270_120--Hb_002542_110 Hb_000304_030 Hb_000304_030 Hb_000021_050--Hb_000304_030 Hb_001619_040 Hb_001619_040 Hb_000021_050--Hb_001619_040 Hb_000009_050 Hb_000009_050 Hb_000021_050--Hb_000009_050 Hb_012573_040 Hb_012573_040 Hb_000021_050--Hb_012573_040 Hb_004993_060 Hb_004993_060 Hb_000021_050--Hb_004993_060 Hb_001105_110 Hb_001105_110 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_000086_630--Hb_002542_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48865 34.2815 11.0642 8.74592 11.9198 2.80072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0162 12.8155 17.2634 22.1254 23.6804

CAGE analysis