Hb_003839_060

Information

Type -
Description -
Location Contig3839: 52234-52651
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11750g
description POPTRDRAFT_821190; hypothetical protein
nr
ID XP_012476438.1
description PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2N8K7
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G119700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003839_060 0.0 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
2 Hb_174644_010 0.0483061543 - - -
3 Hb_003442_020 0.0502582371 - - ccd1, putative [Ricinus communis]
4 Hb_001104_250 0.0688098986 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
5 Hb_123887_010 0.0748818198 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
6 Hb_023536_020 0.0768063624 - - Nicotianamine synthase, putative [Ricinus communis]
7 Hb_003777_100 0.0775390251 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_010261_050 0.0856480245 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000164_250 0.0885780499 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
10 Hb_000172_260 0.0986990608 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
11 Hb_005695_050 0.1002250256 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
12 Hb_000769_050 0.1035789452 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
13 Hb_000433_060 0.1039725226 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
14 Hb_032280_010 0.1094975891 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
15 Hb_002374_070 0.1107980246 - - amino acid transporter, putative [Ricinus communis]
16 Hb_003337_010 0.1148188672 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004125_080 0.1195512148 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
18 Hb_002411_070 0.1223176948 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
19 Hb_002548_010 0.1232143027 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
20 Hb_000152_090 0.1235821159 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_003839_060 Hb_003839_060 Hb_174644_010 Hb_174644_010 Hb_003839_060--Hb_174644_010 Hb_003442_020 Hb_003442_020 Hb_003839_060--Hb_003442_020 Hb_001104_250 Hb_001104_250 Hb_003839_060--Hb_001104_250 Hb_123887_010 Hb_123887_010 Hb_003839_060--Hb_123887_010 Hb_023536_020 Hb_023536_020 Hb_003839_060--Hb_023536_020 Hb_003777_100 Hb_003777_100 Hb_003839_060--Hb_003777_100 Hb_174644_010--Hb_023536_020 Hb_000433_060 Hb_000433_060 Hb_174644_010--Hb_000433_060 Hb_000172_260 Hb_000172_260 Hb_174644_010--Hb_000172_260 Hb_000164_250 Hb_000164_250 Hb_174644_010--Hb_000164_250 Hb_174644_010--Hb_003442_020 Hb_010261_050 Hb_010261_050 Hb_003442_020--Hb_010261_050 Hb_003337_010 Hb_003337_010 Hb_003442_020--Hb_003337_010 Hb_003442_020--Hb_001104_250 Hb_003442_020--Hb_123887_010 Hb_003442_020--Hb_003777_100 Hb_002548_010 Hb_002548_010 Hb_001104_250--Hb_002548_010 Hb_000769_050 Hb_000769_050 Hb_001104_250--Hb_000769_050 Hb_001104_250--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_001104_250--Hb_000152_090 Hb_123887_010--Hb_000769_050 Hb_123887_010--Hb_010261_050 Hb_123887_010--Hb_174644_010 Hb_002411_070 Hb_002411_070 Hb_023536_020--Hb_002411_070 Hb_000373_110 Hb_000373_110 Hb_023536_020--Hb_000373_110 Hb_002374_070 Hb_002374_070 Hb_023536_020--Hb_002374_070 Hb_023536_020--Hb_000433_060 Hb_003777_100--Hb_000164_250 Hb_003777_100--Hb_010261_050 Hb_032280_010 Hb_032280_010 Hb_003777_100--Hb_032280_010 Hb_003777_100--Hb_000172_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.494498 0.0814939 1.48231 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis