Hb_003847_030

Information

Type -
Description -
Location Contig3847: 21319-23031
Sequence    

Annotation

kegg
ID rcu:RCOM_1122470
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012092708.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
swissprot
ID Q9LFQ4
description Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2
trembl
ID B9SHK0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1122470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38713: 22317-22799 , PASA_asmbl_38714: 22918-23127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
2 Hb_000327_180 0.0633479972 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
3 Hb_000049_210 0.0636021297 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
4 Hb_000614_250 0.071084377 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
5 Hb_005054_110 0.0725020762 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_000497_300 0.074392891 - - peroxisomal membrane protein [Hevea brasiliensis]
7 Hb_001014_030 0.0763873861 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002481_080 0.0778081989 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
9 Hb_001352_020 0.0781653554 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
10 Hb_011386_010 0.0781871844 - - mitochondrial carrier protein, putative [Ricinus communis]
11 Hb_002450_020 0.0789772533 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
12 Hb_000603_080 0.0791901792 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
13 Hb_000406_140 0.0804446817 - - conserved hypothetical protein [Ricinus communis]
14 Hb_164010_030 0.0805570423 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
15 Hb_001898_080 0.0810909248 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
16 Hb_000095_080 0.081107583 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
17 Hb_003376_250 0.0814193675 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
18 Hb_000116_260 0.0815146836 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
19 Hb_000297_010 0.0824056398 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_001633_210 0.0824543893 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003847_030 Hb_003847_030 Hb_000327_180 Hb_000327_180 Hb_003847_030--Hb_000327_180 Hb_000049_210 Hb_000049_210 Hb_003847_030--Hb_000049_210 Hb_000614_250 Hb_000614_250 Hb_003847_030--Hb_000614_250 Hb_005054_110 Hb_005054_110 Hb_003847_030--Hb_005054_110 Hb_000497_300 Hb_000497_300 Hb_003847_030--Hb_000497_300 Hb_001014_030 Hb_001014_030 Hb_003847_030--Hb_001014_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_001195_200 Hb_001195_200 Hb_000327_180--Hb_001195_200 Hb_000327_180--Hb_005054_110 Hb_003376_250 Hb_003376_250 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_000049_210--Hb_005054_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_149985_010 Hb_149985_010 Hb_000049_210--Hb_149985_010 Hb_000890_150 Hb_000890_150 Hb_000049_210--Hb_000890_150 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000614_250--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_000614_250--Hb_001633_210 Hb_000614_250--Hb_001014_030 Hb_002450_020 Hb_002450_020 Hb_000614_250--Hb_002450_020 Hb_000614_250--Hb_000710_060 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_010344_050 Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_001014_030--Hb_000840_250 Hb_001014_030--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_001014_030--Hb_000297_010 Hb_001014_030--Hb_002450_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18141 1.73157 0.950675 1.98437 0.9327 1.77378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74467 2.23851 2.83027 2.42362 1.9539

CAGE analysis