Hb_003847_060

Information

Type -
Description -
Location Contig3847: 40889-41830
Sequence    

Annotation

kegg
ID rcu:RCOM_1122500
description syntaxin, putative
nr
ID XP_002525472.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q42374
description Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1
trembl
ID B9SHK3
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1122500 PE=3 SV=1
Gene Ontology
ID GO:0005886
description syntaxin-related protein knolle

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38717: 40516-42046
cDNA
(Sanger)
(ID:Location)		 018_C16.ab1: 40516-41433

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_060 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_005398_050 0.0658625071 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
3 Hb_001307_150 0.0683081785 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_001950_090 0.0696616209 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
5 Hb_001699_270 0.0765759224 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
6 Hb_000856_390 0.0792572445 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000480_060 0.0796611486 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
8 Hb_000035_230 0.0797755789 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
9 Hb_006588_100 0.0834305965 - - conserved hypothetical protein [Ricinus communis]
10 Hb_128392_010 0.0844109141 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
11 Hb_000527_020 0.0889605384 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
12 Hb_016898_020 0.0898301306 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
13 Hb_003656_080 0.090768089 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
14 Hb_000069_650 0.0933246777 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000890_140 0.0935350914 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
16 Hb_000317_120 0.0938315264 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
17 Hb_021576_050 0.0940559719 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
18 Hb_001390_040 0.0940975914 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
19 Hb_000345_450 0.0950630398 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
20 Hb_009113_060 0.1054520241 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003847_060 Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_003847_060--Hb_005398_050 Hb_001307_150 Hb_001307_150 Hb_003847_060--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_003847_060--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_003847_060--Hb_001699_270 Hb_000856_390 Hb_000856_390 Hb_003847_060--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_003847_060--Hb_000480_060 Hb_000527_020 Hb_000527_020 Hb_005398_050--Hb_000527_020 Hb_078448_010 Hb_078448_010 Hb_005398_050--Hb_078448_010 Hb_000035_230 Hb_000035_230 Hb_005398_050--Hb_000035_230 Hb_005398_050--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_005398_050--Hb_016898_020 Hb_001307_150--Hb_000856_390 Hb_001307_150--Hb_000480_060 Hb_001307_150--Hb_016898_020 Hb_001307_150--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_001950_090--Hb_001699_270 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001699_270--Hb_000480_060 Hb_001699_270--Hb_000345_450 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_000480_060--Hb_006588_100 Hb_000480_060--Hb_000345_450 Hb_000480_060--Hb_000085_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0952923 0.94779 32.6533 25.4508 0 0.053753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0787444 3.09694 1.13734

CAGE analysis