Hb_003847_120

Information

Type -
Description -
Location Contig3847: 117221-121221
Sequence    

Annotation

kegg
ID rcu:RCOM_1312720
description WD-repeat protein, putative
nr
ID XP_002518879.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q498F0
description WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1
trembl
ID B9RYR0
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1312720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38728: 117050-120422 , PASA_asmbl_38729: 120538-121186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_120 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_015026_050 0.0702411662 - - XPA-binding protein, putative [Ricinus communis]
3 Hb_020665_030 0.0721486781 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001473_090 0.0751941253 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
5 Hb_006915_060 0.077123299 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
6 Hb_000475_020 0.0826201094 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
7 Hb_000029_320 0.0855062169 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
8 Hb_009151_020 0.087727188 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
9 Hb_064903_010 0.0877630115 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
10 Hb_003656_180 0.0883542347 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
11 Hb_003044_020 0.0893422694 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
12 Hb_002221_050 0.089389741 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
13 Hb_000768_070 0.0894534404 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
14 Hb_147737_010 0.0898123835 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
15 Hb_009411_010 0.0904790311 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
16 Hb_000320_380 0.0914147232 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
17 Hb_001575_080 0.0918045153 - - PREDICTED: villin-4-like [Jatropha curcas]
18 Hb_002471_210 0.0919310664 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
19 Hb_003124_130 0.0922245628 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
20 Hb_000743_040 0.0922308317 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003847_120 Hb_003847_120 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_020665_030 Hb_020665_030 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_006915_060 Hb_006915_060 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320 Hb_000320_380 Hb_000320_380 Hb_015026_050--Hb_000320_380 Hb_147737_010 Hb_147737_010 Hb_015026_050--Hb_147737_010 Hb_002221_050 Hb_002221_050 Hb_015026_050--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_015026_050--Hb_000329_130 Hb_007885_070 Hb_007885_070 Hb_015026_050--Hb_007885_070 Hb_009151_020 Hb_009151_020 Hb_020665_030--Hb_009151_020 Hb_020665_030--Hb_000329_130 Hb_000347_570 Hb_000347_570 Hb_020665_030--Hb_000347_570 Hb_000714_050 Hb_000714_050 Hb_020665_030--Hb_000714_050 Hb_000320_200 Hb_000320_200 Hb_020665_030--Hb_000320_200 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_001473_090--Hb_000347_570 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_003544_100 Hb_003544_100 Hb_006915_060--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_000010_180 Hb_000010_180 Hb_006915_060--Hb_000010_180 Hb_001599_030 Hb_001599_030 Hb_006915_060--Hb_001599_030 Hb_001811_120 Hb_001811_120 Hb_000475_020--Hb_001811_120 Hb_002471_210 Hb_002471_210 Hb_000475_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_002291_070 Hb_002291_070 Hb_000475_020--Hb_002291_070 Hb_000475_020--Hb_147737_010 Hb_002070_070 Hb_002070_070 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_000029_320--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_000029_320--Hb_000329_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1589 17.832 8.4603 12.2237 28.9053 32.2955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02437 8.02703 12.6888 7.41816 13.0972

CAGE analysis