Hb_003848_040

Information

Type -
Description -
Location Contig3848: 41048-48225
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09390g
description POPTRDRAFT_554044; hypothetical protein
nr
ID XP_012081053.1
description PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
swissprot
ID Q60GF7
description Phosphatidylinositol-glycan biosynthesis class X protein OS=Rattus norvegicus GN=Pigx PE=1 SV=2
trembl
ID A9PIK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09390g PE=2 SV=1
Gene Ontology
ID GO:0005789
description phosphatidylinositol-glycan biosynthesis class x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38734: 41223-46295 , PASA_asmbl_38735: 46599-47798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003848_040 0.0 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
2 Hb_001105_170 0.0661578566 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
3 Hb_012565_070 0.0712767818 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_012340_090 0.0786621562 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
5 Hb_003207_180 0.0796778655 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
6 Hb_000300_260 0.0802752078 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
7 Hb_001472_100 0.0827256936 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_002820_050 0.0861994485 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
9 Hb_002946_190 0.0867226484 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
10 Hb_000270_470 0.0882281422 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
11 Hb_146673_010 0.0905512118 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
12 Hb_000599_260 0.0927743127 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
13 Hb_004453_130 0.0951746155 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
14 Hb_000457_180 0.0972831423 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
15 Hb_004041_020 0.0974214158 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
16 Hb_001396_210 0.0980592474 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008225_090 0.099482043 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
18 Hb_000976_120 0.1000650299 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
19 Hb_002876_240 0.1011032045 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
20 Hb_182424_030 0.1012900927 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]

Gene co-expression network

sample Hb_003848_040 Hb_003848_040 Hb_001105_170 Hb_001105_170 Hb_003848_040--Hb_001105_170 Hb_012565_070 Hb_012565_070 Hb_003848_040--Hb_012565_070 Hb_012340_090 Hb_012340_090 Hb_003848_040--Hb_012340_090 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_001105_170--Hb_012340_090 Hb_002343_040 Hb_002343_040 Hb_001105_170--Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_001105_170--Hb_001863_380 Hb_001105_170--Hb_012565_070 Hb_001105_170--Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_001025_090 Hb_001025_090 Hb_012340_090--Hb_001025_090 Hb_002284_150 Hb_002284_150 Hb_012340_090--Hb_002284_150 Hb_003207_180--Hb_001472_100 Hb_000260_630 Hb_000260_630 Hb_003207_180--Hb_000260_630 Hb_003207_180--Hb_000300_260 Hb_000069_720 Hb_000069_720 Hb_003207_180--Hb_000069_720 Hb_000130_270 Hb_000130_270 Hb_003207_180--Hb_000130_270 Hb_004312_010 Hb_004312_010 Hb_000300_260--Hb_004312_010 Hb_000173_310 Hb_000173_310 Hb_000300_260--Hb_000173_310 Hb_003213_010 Hb_003213_010 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65941 4.4163 13.1947 7.5056 4.85192 5.41485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7036 10.88 3.58063 4.94148 5.30077

CAGE analysis