Hb_003848_050

Information

Type -
Description -
Location Contig3848: 72286-74641
Sequence    

Annotation

kegg
ID tcc:TCM_028769
description Serine-threonine protein kinase, plant-type, putative
nr
ID XP_012081576.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID A0A067KDD8
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_18439 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003848_050 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
2 Hb_004017_020 0.000647108 - - Squalene monooxygenase, putative [Ricinus communis]
3 Hb_021943_010 0.0019774349 - - -
4 Hb_158467_020 0.0021654379 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_002415_010 0.0026440129 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
6 Hb_005503_020 0.0029345528 - - Hypothetical protein glysoja_025074 [Glycine soja]
7 Hb_027468_010 0.0044432603 - - kinase, putative [Ricinus communis]
8 Hb_002233_180 0.0047130251 - - -
9 Hb_001581_030 0.0047324462 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
10 Hb_000212_200 0.0049443877 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
11 Hb_004028_010 0.0061770756 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_000123_130 0.0068525028 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
13 Hb_005062_090 0.0079821238 - - ferredoxin [Vibrio natriegens]
14 Hb_073973_040 0.0081568001 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
15 Hb_185532_010 0.0121514375 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
16 Hb_003294_080 0.0165735679 - - -
17 Hb_132330_010 0.041124518 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000230_350 0.0417498504 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
19 Hb_003850_030 0.0555629161 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_001743_080 0.0646526499 - - -

Gene co-expression network

sample Hb_003848_050 Hb_003848_050 Hb_004017_020 Hb_004017_020 Hb_003848_050--Hb_004017_020 Hb_021943_010 Hb_021943_010 Hb_003848_050--Hb_021943_010 Hb_158467_020 Hb_158467_020 Hb_003848_050--Hb_158467_020 Hb_002415_010 Hb_002415_010 Hb_003848_050--Hb_002415_010 Hb_005503_020 Hb_005503_020 Hb_003848_050--Hb_005503_020 Hb_027468_010 Hb_027468_010 Hb_003848_050--Hb_027468_010 Hb_004017_020--Hb_021943_010 Hb_004017_020--Hb_158467_020 Hb_004017_020--Hb_002415_010 Hb_004017_020--Hb_005503_020 Hb_004017_020--Hb_027468_010 Hb_021943_010--Hb_027468_010 Hb_001581_030 Hb_001581_030 Hb_021943_010--Hb_001581_030 Hb_000212_200 Hb_000212_200 Hb_021943_010--Hb_000212_200 Hb_021943_010--Hb_158467_020 Hb_158467_020--Hb_002415_010 Hb_158467_020--Hb_005503_020 Hb_002233_180 Hb_002233_180 Hb_158467_020--Hb_002233_180 Hb_002415_010--Hb_005503_020 Hb_002415_010--Hb_002233_180 Hb_000123_130 Hb_000123_130 Hb_002415_010--Hb_000123_130 Hb_005503_020--Hb_002233_180 Hb_005503_020--Hb_000123_130 Hb_027468_010--Hb_001581_030 Hb_027468_010--Hb_000212_200 Hb_004028_010 Hb_004028_010 Hb_027468_010--Hb_004028_010 Hb_005062_090 Hb_005062_090 Hb_027468_010--Hb_005062_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0230987 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0108143 0

CAGE analysis