Hb_003849_040

Information

Type -
Description -
Location Contig3849: 22355-28247
Sequence    

Annotation

kegg
ID rcu:RCOM_0794270
description afc, putative (EC:2.7.12.1)
nr
ID XP_012085505.1
description PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
swissprot
ID P51567
description Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1
trembl
ID A0A067JRU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17834 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase afc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38739: 21437-21748 , PASA_asmbl_38740: 22487-24046 , PASA_asmbl_38741: 23247-23535 , PASA_asmbl_38743: 27624-28004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_040 0.0 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
2 Hb_002890_150 0.0787475434 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
3 Hb_000156_160 0.1017856555 - - PREDICTED: urease accessory protein G [Jatropha curcas]
4 Hb_000077_010 0.1039733624 - - unnamed protein product [Vitis vinifera]
5 Hb_000985_040 0.1047448468 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
6 Hb_000077_120 0.1048926594 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
7 Hb_044155_010 0.1074498665 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
8 Hb_000436_100 0.109050313 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
9 Hb_000098_140 0.1145950012 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
10 Hb_002255_040 0.1156564715 - - PREDICTED: biotin synthase [Jatropha curcas]
11 Hb_004079_120 0.1188523372 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
12 Hb_000538_260 0.1246807365 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
13 Hb_001662_040 0.125665297 - - DNA helicase, putative [Ricinus communis]
14 Hb_016734_090 0.1258799835 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
15 Hb_002291_060 0.1260667718 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
16 Hb_006573_160 0.1262458887 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_002870_020 0.1265760578 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
18 Hb_003638_010 0.1276348047 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
19 Hb_010287_030 0.128764664 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009265_050 0.1291789873 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_003849_040 Hb_003849_040 Hb_002890_150 Hb_002890_150 Hb_003849_040--Hb_002890_150 Hb_000156_160 Hb_000156_160 Hb_003849_040--Hb_000156_160 Hb_000077_010 Hb_000077_010 Hb_003849_040--Hb_000077_010 Hb_000985_040 Hb_000985_040 Hb_003849_040--Hb_000985_040 Hb_000077_120 Hb_000077_120 Hb_003849_040--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_003849_040--Hb_044155_010 Hb_002890_150--Hb_000077_120 Hb_002890_150--Hb_000985_040 Hb_002890_150--Hb_044155_010 Hb_005054_190 Hb_005054_190 Hb_002890_150--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_002890_150--Hb_005610_080 Hb_002092_100 Hb_002092_100 Hb_000156_160--Hb_002092_100 Hb_005288_080 Hb_005288_080 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_016734_090 Hb_016734_090 Hb_000156_160--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_000156_160--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_000156_160--Hb_011918_050 Hb_000436_100 Hb_000436_100 Hb_000077_010--Hb_000436_100 Hb_000077_010--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_000077_010--Hb_002739_130 Hb_004079_120 Hb_004079_120 Hb_000077_010--Hb_004079_120 Hb_000077_010--Hb_000156_160 Hb_006658_030 Hb_006658_030 Hb_000077_010--Hb_006658_030 Hb_010287_030 Hb_010287_030 Hb_000985_040--Hb_010287_030 Hb_000985_040--Hb_000077_120 Hb_011344_070 Hb_011344_070 Hb_000985_040--Hb_011344_070 Hb_048476_150 Hb_048476_150 Hb_000985_040--Hb_048476_150 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_000077_120--Hb_044155_010 Hb_013405_150 Hb_013405_150 Hb_000077_120--Hb_013405_150 Hb_000139_220 Hb_000139_220 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_044155_010--Hb_013405_150 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34494 6.68239 14.1292 3.09256 6.78805 4.61419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67294 1.81212 0.969632 3.4879 5.25907

CAGE analysis