Hb_003849_050

Information

Type -
Description -
Location Contig3849: 28620-29825
Sequence    

Annotation

kegg
ID rcu:RCOM_0794260
description hypothetical protein
nr
ID XP_002530053.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0794260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38746: 30682-31022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011649_010 0.1395624852 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
3 Hb_002814_010 0.1614639371 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
4 Hb_000723_320 0.1643265352 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
5 Hb_002475_060 0.1668465861 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
6 Hb_001252_030 0.1674507745 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
7 Hb_010721_020 0.1700455092 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
8 Hb_034507_050 0.1710211076 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
9 Hb_000118_090 0.1724683324 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
10 Hb_010666_010 0.1730910646 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003849_070 0.173991432 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
12 Hb_032631_020 0.1760296045 - - glycine-rich family protein [Populus trichocarpa]
13 Hb_001377_060 0.1768885594 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
14 Hb_002235_070 0.1773001033 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
15 Hb_071079_020 0.1781572795 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_000139_270 0.1790153138 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
17 Hb_000208_270 0.1796286646 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
18 Hb_007765_050 0.1808150181 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Jatropha curcas]
19 Hb_010174_100 0.1830274999 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
20 Hb_000029_330 0.1831233193 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003849_050 Hb_003849_050 Hb_011649_010 Hb_011649_010 Hb_003849_050--Hb_011649_010 Hb_002814_010 Hb_002814_010 Hb_003849_050--Hb_002814_010 Hb_000723_320 Hb_000723_320 Hb_003849_050--Hb_000723_320 Hb_002475_060 Hb_002475_060 Hb_003849_050--Hb_002475_060 Hb_001252_030 Hb_001252_030 Hb_003849_050--Hb_001252_030 Hb_010721_020 Hb_010721_020 Hb_003849_050--Hb_010721_020 Hb_000118_090 Hb_000118_090 Hb_011649_010--Hb_000118_090 Hb_011649_010--Hb_010721_020 Hb_000317_180 Hb_000317_180 Hb_011649_010--Hb_000317_180 Hb_000193_220 Hb_000193_220 Hb_011649_010--Hb_000193_220 Hb_071079_020 Hb_071079_020 Hb_011649_010--Hb_071079_020 Hb_000045_050 Hb_000045_050 Hb_011649_010--Hb_000045_050 Hb_001541_280 Hb_001541_280 Hb_002814_010--Hb_001541_280 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_020141_030 Hb_020141_030 Hb_002814_010--Hb_020141_030 Hb_000208_270 Hb_000208_270 Hb_002814_010--Hb_000208_270 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_000723_320--Hb_000359_160 Hb_000723_320--Hb_010721_020 Hb_000723_320--Hb_002475_060 Hb_003605_060 Hb_003605_060 Hb_000723_320--Hb_003605_060 Hb_000723_320--Hb_000208_270 Hb_009393_140 Hb_009393_140 Hb_000723_320--Hb_009393_140 Hb_001195_290 Hb_001195_290 Hb_002475_060--Hb_001195_290 Hb_021531_010 Hb_021531_010 Hb_002475_060--Hb_021531_010 Hb_002235_070 Hb_002235_070 Hb_002475_060--Hb_002235_070 Hb_005523_040 Hb_005523_040 Hb_002475_060--Hb_005523_040 Hb_001946_120 Hb_001946_120 Hb_002475_060--Hb_001946_120 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_000103_230 Hb_000103_230 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_001252_030--Hb_020141_030 Hb_000787_210 Hb_000787_210 Hb_001252_030--Hb_000787_210 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_010721_020--Hb_000193_220 Hb_002811_250 Hb_002811_250 Hb_010721_020--Hb_002811_250 Hb_010721_020--Hb_000118_090 Hb_007982_040 Hb_007982_040 Hb_010721_020--Hb_007982_040 Hb_010721_020--Hb_000045_050 Hb_010721_020--Hb_000317_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0573303 0.19086 0.720751 0.718196 0.235095 0.0465526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0634474 0 0.0635349 2.03583

CAGE analysis