Hb_003849_080

Information

Type -
Description -
Location Contig3849: 48443-53235
Sequence    

Annotation

kegg
ID rcu:RCOM_0794090
description Cysteine desulfuration protein sufE, putative
nr
ID XP_012085520.1
description PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9FXE3
description SufE-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=SUFE2 PE=2 SV=1
trembl
ID A0A067JV38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17841 PE=4 SV=1
Gene Ontology
ID GO:0005488
description quinolinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38750: 49746-53117 , PASA_asmbl_38751: 51181-51555 , PASA_asmbl_38752: 51777-51894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_080 0.0 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_171554_090 0.1364771411 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
3 Hb_175612_010 0.1504175565 transcription factor TF Family: MBF1 orf [Ricinus communis]
4 Hb_004525_100 0.1523642777 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
5 Hb_009801_010 0.1576862153 - - ATPase inhibitor, putative [Ricinus communis]
6 Hb_004241_040 0.1579716736 - - -
7 Hb_006261_040 0.1600375619 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
8 Hb_001623_370 0.1602981937 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001565_100 0.1610856203 - - unnamed protein product [Coffea canephora]
10 Hb_004447_030 0.1646116676 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
11 Hb_004662_010 0.1656649888 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
12 Hb_000236_300 0.1668282371 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
13 Hb_001663_110 0.1670481837 - - RNA binding protein, putative [Ricinus communis]
14 Hb_000976_270 0.1680290717 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
15 Hb_003633_130 0.1689927202 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
16 Hb_000175_390 0.1696543351 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
17 Hb_000209_090 0.1705656268 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_003544_090 0.1706336908 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
19 Hb_001956_120 0.1724901523 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000072_140 0.1729394734 - - -

Gene co-expression network

sample Hb_003849_080 Hb_003849_080 Hb_171554_090 Hb_171554_090 Hb_003849_080--Hb_171554_090 Hb_175612_010 Hb_175612_010 Hb_003849_080--Hb_175612_010 Hb_004525_100 Hb_004525_100 Hb_003849_080--Hb_004525_100 Hb_009801_010 Hb_009801_010 Hb_003849_080--Hb_009801_010 Hb_004241_040 Hb_004241_040 Hb_003849_080--Hb_004241_040 Hb_006261_040 Hb_006261_040 Hb_003849_080--Hb_006261_040 Hb_004502_030 Hb_004502_030 Hb_171554_090--Hb_004502_030 Hb_044662_040 Hb_044662_040 Hb_171554_090--Hb_044662_040 Hb_025236_040 Hb_025236_040 Hb_171554_090--Hb_025236_040 Hb_001951_260 Hb_001951_260 Hb_171554_090--Hb_001951_260 Hb_000058_040 Hb_000058_040 Hb_171554_090--Hb_000058_040 Hb_003633_130 Hb_003633_130 Hb_171554_090--Hb_003633_130 Hb_007534_040 Hb_007534_040 Hb_175612_010--Hb_007534_040 Hb_000617_220 Hb_000617_220 Hb_175612_010--Hb_000617_220 Hb_000175_390 Hb_000175_390 Hb_175612_010--Hb_000175_390 Hb_000236_300 Hb_000236_300 Hb_175612_010--Hb_000236_300 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_000088_200 Hb_000088_200 Hb_004525_100--Hb_000088_200 Hb_000236_280 Hb_000236_280 Hb_004525_100--Hb_000236_280 Hb_004525_100--Hb_000617_220 Hb_004044_020 Hb_004044_020 Hb_004525_100--Hb_004044_020 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_005015_010 Hb_005015_010 Hb_009801_010--Hb_005015_010 Hb_000392_280 Hb_000392_280 Hb_009801_010--Hb_000392_280 Hb_000307_170 Hb_000307_170 Hb_009801_010--Hb_000307_170 Hb_009801_010--Hb_000976_270 Hb_003581_110 Hb_003581_110 Hb_009801_010--Hb_003581_110 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_004241_040--Hb_025236_040 Hb_005054_070 Hb_005054_070 Hb_004241_040--Hb_005054_070 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010 Hb_017098_030 Hb_017098_030 Hb_006261_040--Hb_017098_030 Hb_000345_560 Hb_000345_560 Hb_006261_040--Hb_000345_560 Hb_012675_090 Hb_012675_090 Hb_006261_040--Hb_012675_090 Hb_006261_040--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006261_040--Hb_033080_010 Hb_001437_300 Hb_001437_300 Hb_006261_040--Hb_001437_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3884 1.6988 3.38909 2.72414 11.0821 15.6512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18332 10.0047 1.04928 0.439674 1.23579

CAGE analysis