Hb_003849_090

Information

Type -
Description -
Location Contig3849: 54255-54910
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_090 0.0 - - -
2 Hb_004958_040 0.244931636 - - -
3 Hb_187459_010 0.2640898391 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
4 Hb_001907_090 0.2707919288 - - -
5 Hb_075745_010 0.2720631348 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
6 Hb_000684_480 0.2782998844 transcription factor TF Family: Orphans -
7 Hb_001579_040 0.3018829746 - - -
8 Hb_001712_080 0.3043125615 - - -
9 Hb_000289_080 0.309803921 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000316_090 0.3149924711 - - -
11 Hb_120052_010 0.3158750987 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
12 Hb_168737_010 0.3183286313 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_059952_010 0.3188707125 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
14 Hb_002732_020 0.3243171516 - - -
15 Hb_006995_010 0.3259946315 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
16 Hb_003029_100 0.3294173426 - - -
17 Hb_000926_350 0.329530919 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
18 Hb_148658_010 0.3309609203 - - -
19 Hb_027287_010 0.3311161722 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000066_180 0.331304756 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]

Gene co-expression network

sample Hb_003849_090 Hb_003849_090 Hb_004958_040 Hb_004958_040 Hb_003849_090--Hb_004958_040 Hb_187459_010 Hb_187459_010 Hb_003849_090--Hb_187459_010 Hb_001907_090 Hb_001907_090 Hb_003849_090--Hb_001907_090 Hb_075745_010 Hb_075745_010 Hb_003849_090--Hb_075745_010 Hb_000684_480 Hb_000684_480 Hb_003849_090--Hb_000684_480 Hb_001579_040 Hb_001579_040 Hb_003849_090--Hb_001579_040 Hb_059952_010 Hb_059952_010 Hb_004958_040--Hb_059952_010 Hb_122567_020 Hb_122567_020 Hb_004958_040--Hb_122567_020 Hb_004958_040--Hb_001907_090 Hb_005933_010 Hb_005933_010 Hb_004958_040--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_004958_040--Hb_000617_170 Hb_000805_300 Hb_000805_300 Hb_004958_040--Hb_000805_300 Hb_012150_050 Hb_012150_050 Hb_187459_010--Hb_012150_050 Hb_032531_040 Hb_032531_040 Hb_187459_010--Hb_032531_040 Hb_187459_010--Hb_001579_040 Hb_187459_010--Hb_059952_010 Hb_001454_110 Hb_001454_110 Hb_187459_010--Hb_001454_110 Hb_187459_010--Hb_001907_090 Hb_001907_090--Hb_000684_480 Hb_001907_090--Hb_122567_020 Hb_000066_180 Hb_000066_180 Hb_001907_090--Hb_000066_180 Hb_001385_080 Hb_001385_080 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_003029_100 Hb_003029_100 Hb_075745_010--Hb_003029_100 Hb_000289_080 Hb_000289_080 Hb_075745_010--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_075745_010--Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_075745_010--Hb_003656_150 Hb_120052_010 Hb_120052_010 Hb_075745_010--Hb_120052_010 Hb_012675_080 Hb_012675_080 Hb_075745_010--Hb_012675_080 Hb_000316_090 Hb_000316_090 Hb_000684_480--Hb_000316_090 Hb_000684_480--Hb_003029_100 Hb_000684_480--Hb_004958_040 Hb_124141_010 Hb_124141_010 Hb_000684_480--Hb_124141_010 Hb_000684_480--Hb_075745_010 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001579_040--Hb_001454_110 Hb_001579_040--Hb_059952_010 Hb_001579_040--Hb_000316_090 Hb_001579_040--Hb_032531_040 Hb_145827_010 Hb_145827_010 Hb_001579_040--Hb_145827_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.05264 0 1.399 0 5.31332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22128 0.484281 0 0 0

CAGE analysis