Hb_003849_100

Information

Type -
Description -
Location Contig3849: 55830-61654
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16940g
description POPTRDRAFT_713135; hypothetical protein
nr
ID XP_011047385.1
description PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
swissprot
ID Q9STN3
description Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
trembl
ID B9H0X9
description Transcription elongation factor SPT5 OS=Populus trichocarpa GN=POPTR_0004s16940g PE=3 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38755: 59138-60388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_100 0.0 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
2 Hb_001587_070 0.1303387463 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
3 Hb_000243_080 0.1423057492 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
4 Hb_003687_150 0.1431935792 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
5 Hb_005569_020 0.1456660879 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006711_060 0.1528460462 - - Tubulin beta-1 chain [Morus notabilis]
7 Hb_000046_100 0.154497559 - - NADH dehydrogenase, putative [Ricinus communis]
8 Hb_000103_320 0.1557346561 - - Stem-specific protein TSJT1, putative [Ricinus communis]
9 Hb_000914_170 0.1574319194 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
10 Hb_000140_050 0.1623072545 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
11 Hb_000032_440 0.1623898125 - - protein with unknown function [Ricinus communis]
12 Hb_005433_040 0.1629375932 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
13 Hb_001279_340 0.1637003719 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
14 Hb_003581_150 0.1645530384 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
15 Hb_000212_350 0.1659133499 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
16 Hb_003582_040 0.1669381668 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
17 Hb_006831_120 0.1670897382 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
18 Hb_002183_070 0.1673293271 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
19 Hb_000258_330 0.1676752123 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_004225_030 0.1693003051 - - hypothetical protein F383_15788 [Gossypium arboreum]

Gene co-expression network

sample Hb_003849_100 Hb_003849_100 Hb_001587_070 Hb_001587_070 Hb_003849_100--Hb_001587_070 Hb_000243_080 Hb_000243_080 Hb_003849_100--Hb_000243_080 Hb_003687_150 Hb_003687_150 Hb_003849_100--Hb_003687_150 Hb_005569_020 Hb_005569_020 Hb_003849_100--Hb_005569_020 Hb_006711_060 Hb_006711_060 Hb_003849_100--Hb_006711_060 Hb_000046_100 Hb_000046_100 Hb_003849_100--Hb_000046_100 Hb_000539_030 Hb_000539_030 Hb_001587_070--Hb_000539_030 Hb_162275_030 Hb_162275_030 Hb_001587_070--Hb_162275_030 Hb_006472_050 Hb_006472_050 Hb_001587_070--Hb_006472_050 Hb_003732_010 Hb_003732_010 Hb_001587_070--Hb_003732_010 Hb_001587_070--Hb_003687_150 Hb_019516_080 Hb_019516_080 Hb_000243_080--Hb_019516_080 Hb_000914_170 Hb_000914_170 Hb_000243_080--Hb_000914_170 Hb_000103_320 Hb_000103_320 Hb_000243_080--Hb_000103_320 Hb_000138_170 Hb_000138_170 Hb_000243_080--Hb_000138_170 Hb_000243_080--Hb_003687_150 Hb_000272_140 Hb_000272_140 Hb_000243_080--Hb_000272_140 Hb_027073_050 Hb_027073_050 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090 Hb_001096_110 Hb_001096_110 Hb_005569_020--Hb_001096_110 Hb_000141_020 Hb_000141_020 Hb_005569_020--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_005569_020--Hb_010407_180 Hb_000406_120 Hb_000406_120 Hb_005569_020--Hb_000406_120 Hb_001159_080 Hb_001159_080 Hb_005569_020--Hb_001159_080 Hb_000108_070 Hb_000108_070 Hb_005569_020--Hb_000108_070 Hb_003540_030 Hb_003540_030 Hb_006711_060--Hb_003540_030 Hb_031862_110 Hb_031862_110 Hb_006711_060--Hb_031862_110 Hb_000120_960 Hb_000120_960 Hb_006711_060--Hb_000120_960 Hb_001014_040 Hb_001014_040 Hb_006711_060--Hb_001014_040 Hb_007904_260 Hb_007904_260 Hb_006711_060--Hb_007904_260 Hb_004738_040 Hb_004738_040 Hb_006711_060--Hb_004738_040 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0929604 0.0397931 0.100813 0.10015 0.0571212 0.106533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27383 0.107721 0.284507 0.0257609 0.0452743

CAGE analysis