Hb_003849_110

Information

Type -
Description -
Location Contig3849: 62595-75120
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05810g
description POPTRDRAFT_726204; eukaryotic translation initiation factor 4B family protein
nr
ID KDP26684.1
description hypothetical protein JCGZ_17842 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4H4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17842 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 4b family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38756: 62331-75125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_110 0.0 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
2 Hb_003464_090 0.0444924346 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
3 Hb_003428_010 0.0519104083 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
4 Hb_019863_070 0.0523352093 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
5 Hb_000029_060 0.0554126927 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
6 Hb_004916_010 0.0560276377 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
7 Hb_002818_030 0.0561195681 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
8 Hb_000484_130 0.057961214 - - splicing factor, putative [Ricinus communis]
9 Hb_000069_310 0.0591105383 - - ubiquitin ligase [Cucumis melo subsp. melo]
10 Hb_010068_080 0.06017059 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
11 Hb_001359_050 0.0604914092 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005653_090 0.0623637211 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
13 Hb_062226_130 0.0626613208 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
14 Hb_003906_200 0.0634707103 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
15 Hb_093458_040 0.0640496632 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
16 Hb_000738_020 0.0642415586 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000025_730 0.0660162112 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
18 Hb_000521_330 0.0669017764 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000331_680 0.0669756794 - - Protein bem46, putative [Ricinus communis]
20 Hb_002007_150 0.0677205088 - - -

Gene co-expression network

sample Hb_003849_110 Hb_003849_110 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_019863_070--Hb_002818_030 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_004916_010--Hb_002818_030 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_004916_010--Hb_001716_020 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.592 46.7321 33.7178 33.6098 25.038 27.7828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5747 40.602 34.3531 32.4438 34.165

CAGE analysis