Hb_003849_120

Information

Type -
Description -
Location Contig3849: 75658-80871
Sequence    

Annotation

kegg
ID vvi:100264440
description uncharacterized LOC100264440
nr
ID XP_002285509.2
description PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
swissprot
ID Q9LIN2
description GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1
trembl
ID B9SVM3
description Alpha-L-fucosidase 2, putative OS=Ricinus communis GN=RCOM_0794040 PE=4 SV=1
Gene Ontology
ID GO:0016788
description alpha-l-fucosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38756: 62331-75125 , PASA_asmbl_38757: 75739-78628 , PASA_asmbl_38758: 75739-77695 , PASA_asmbl_38759: 80362-80932
cDNA
(Sanger)
(ID:Location)		 025_D23.ab1: 75739-77200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_120 0.0 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
2 Hb_000012_400 0.0972487294 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
3 Hb_000562_100 0.1035137824 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
4 Hb_000997_070 0.1071266863 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
5 Hb_002217_080 0.1103095522 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
6 Hb_000968_060 0.1136460175 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
7 Hb_009078_020 0.1140873897 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
8 Hb_010407_030 0.1161292344 - - PREDICTED: casein kinase I-like [Jatropha curcas]
9 Hb_000866_070 0.1174140152 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
10 Hb_000984_140 0.1179089353 - - PREDICTED: xylulose kinase [Jatropha curcas]
11 Hb_001221_390 0.1182347485 - - Phospholipase C 4 precursor, putative [Ricinus communis]
12 Hb_001009_150 0.1199964649 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
13 Hb_000638_060 0.1204180658 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
14 Hb_000363_180 0.12124163 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
15 Hb_010050_020 0.1216598736 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
16 Hb_012353_040 0.1220138387 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_001439_210 0.125492223 - - EXS family protein [Populus trichocarpa]
18 Hb_000622_330 0.126725091 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
19 Hb_000001_090 0.1267629568 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
20 Hb_000167_040 0.1292568215 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003849_120 Hb_003849_120 Hb_000012_400 Hb_000012_400 Hb_003849_120--Hb_000012_400 Hb_000562_100 Hb_000562_100 Hb_003849_120--Hb_000562_100 Hb_000997_070 Hb_000997_070 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_000968_060 Hb_000968_060 Hb_003849_120--Hb_000968_060 Hb_009078_020 Hb_009078_020 Hb_003849_120--Hb_009078_020 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150 Hb_012353_040 Hb_012353_040 Hb_000562_100--Hb_012353_040 Hb_000562_100--Hb_000997_070 Hb_004052_180 Hb_004052_180 Hb_000562_100--Hb_004052_180 Hb_000866_070 Hb_000866_070 Hb_000562_100--Hb_000866_070 Hb_000167_040 Hb_000167_040 Hb_000997_070--Hb_000167_040 Hb_000997_070--Hb_001195_310 Hb_010381_020 Hb_010381_020 Hb_000997_070--Hb_010381_020 Hb_001969_140 Hb_001969_140 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_002942_230 Hb_002942_230 Hb_002217_080--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_002217_080--Hb_001411_130 Hb_002217_080--Hb_000418_020 Hb_002687_200 Hb_002687_200 Hb_002217_080--Hb_002687_200 Hb_002217_080--Hb_000866_070 Hb_000622_330 Hb_000622_330 Hb_002217_080--Hb_000622_330 Hb_002488_010 Hb_002488_010 Hb_000968_060--Hb_002488_010 Hb_002900_150 Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52811 6.07311 8.84091 11.8672 3.95047 1.70363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.902686 0.805935 0.625191 5.17969 6.88399

CAGE analysis