Hb_003849_150

Information

Type -
Description -
Location Contig3849: 105666-112517
Sequence    

Annotation

kegg
ID rcu:RCOM_0793910
description hypothetical protein
nr
ID XP_012085526.1
description PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SVM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38764: 105803-105945 , PASA_asmbl_38765: 106837-112502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_150 0.0 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
2 Hb_001329_150 0.0871402382 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
3 Hb_011512_040 0.0888862566 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
4 Hb_161175_010 0.0900676583 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
5 Hb_010883_050 0.0909084628 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
6 Hb_006831_120 0.0924792503 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
7 Hb_000340_570 0.0930339167 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
8 Hb_028872_080 0.0968397626 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
9 Hb_000419_070 0.0974449681 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
10 Hb_001545_160 0.0980410633 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
11 Hb_131181_010 0.1031327237 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
12 Hb_003050_280 0.1038973945 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
13 Hb_001218_040 0.1043952733 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
14 Hb_001318_260 0.1045142602 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
15 Hb_026889_030 0.1045217472 - - protein with unknown function [Ricinus communis]
16 Hb_012114_070 0.1048240463 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
17 Hb_018133_020 0.1059793514 - - transporter, putative [Ricinus communis]
18 Hb_000103_320 0.106257315 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_000431_070 0.1072197977 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
20 Hb_000175_030 0.1073334254 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]

Gene co-expression network

sample Hb_003849_150 Hb_003849_150 Hb_001329_150 Hb_001329_150 Hb_003849_150--Hb_001329_150 Hb_011512_040 Hb_011512_040 Hb_003849_150--Hb_011512_040 Hb_161175_010 Hb_161175_010 Hb_003849_150--Hb_161175_010 Hb_010883_050 Hb_010883_050 Hb_003849_150--Hb_010883_050 Hb_006831_120 Hb_006831_120 Hb_003849_150--Hb_006831_120 Hb_000340_570 Hb_000340_570 Hb_003849_150--Hb_000340_570 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_017225_020 Hb_017225_020 Hb_011512_040--Hb_017225_020 Hb_005446_010 Hb_005446_010 Hb_011512_040--Hb_005446_010 Hb_000853_190 Hb_000853_190 Hb_011512_040--Hb_000853_190 Hb_011512_040--Hb_000419_070 Hb_011512_040--Hb_010883_050 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_001545_160 Hb_001545_160 Hb_000340_570--Hb_001545_160 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000261_140 Hb_000261_140 Hb_000340_570--Hb_000261_140 Hb_000205_090 Hb_000205_090 Hb_000340_570--Hb_000205_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3846 7.53561 20.3922 19.9892 8.41715 9.86409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.9155 39.7693 31.1137 10.7868 23.3731

CAGE analysis