Hb_003849_160

Information

Type -
Description -
Location Contig3849: 113619-114062
Sequence    

Annotation

kegg
ID rcu:RCOM_0793900
description protein binding protein, putative
nr
ID XP_012085531.1
description PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
swissprot
ID Q9SI09
description Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1
trembl
ID A0A067JRV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase xerico

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38767: 113468-114300 , PASA_asmbl_38768: 113496-115552 , PASA_asmbl_38769: 113897-115079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_160 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
2 Hb_029552_020 0.0847766955 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000529_130 0.0855597852 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
4 Hb_001999_320 0.0922602276 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
5 Hb_002675_080 0.0975666166 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
6 Hb_009078_020 0.0994127882 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
7 Hb_000968_060 0.0997035397 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
8 Hb_002447_050 0.1036182155 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_007594_080 0.1046651168 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
10 Hb_001140_180 0.1064339128 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
11 Hb_001411_130 0.1078956989 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
12 Hb_011188_010 0.1102018559 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
13 Hb_004994_350 0.1111573867 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
14 Hb_001663_130 0.1119535647 - - acyl-CoA thioesterase, putative [Ricinus communis]
15 Hb_001279_020 0.112914251 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
16 Hb_001001_090 0.1140979625 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
17 Hb_000042_050 0.1146456933 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
18 Hb_001998_210 0.1160274066 - - unnamed protein product [Coffea canephora]
19 Hb_000866_070 0.1166525849 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
20 Hb_004052_110 0.1170136454 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_160 Hb_003849_160 Hb_029552_020 Hb_029552_020 Hb_003849_160--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_003849_160--Hb_000529_130 Hb_001999_320 Hb_001999_320 Hb_003849_160--Hb_001999_320 Hb_002675_080 Hb_002675_080 Hb_003849_160--Hb_002675_080 Hb_009078_020 Hb_009078_020 Hb_003849_160--Hb_009078_020 Hb_000968_060 Hb_000968_060 Hb_003849_160--Hb_000968_060 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_001279_020 Hb_001279_020 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_000562_070 Hb_000562_070 Hb_029552_020--Hb_000562_070 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_001059_060 Hb_001059_060 Hb_001999_320--Hb_001059_060 Hb_003912_080 Hb_003912_080 Hb_001999_320--Hb_003912_080 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_001999_320--Hb_009078_020 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_009078_020--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_002488_010 Hb_002488_010 Hb_000968_060--Hb_002488_010 Hb_002900_150 Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000866_070 Hb_000866_070 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3454 10.8128 16.2151 14.3021 4.02311 5.18148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31495 1.42017 1.27697 4.94965 16.1678

CAGE analysis