Hb_003849_170

Information

Type -
Description -
Location Contig3849: 114730-115023
Sequence    

Annotation

kegg
ID pop:POPTR_0008s18990g
description POPTRDRAFT_565154; hypothetical protein
nr
ID KDP26692.1
description hypothetical protein JCGZ_17850 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38770: 114584-115039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_170 0.0 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
2 Hb_001257_140 0.0643676756 - - Gb:AAF02129.1, putative [Theobroma cacao]
3 Hb_170077_020 0.0698299294 - - PREDICTED: probable serine incorporator [Jatropha curcas]
4 Hb_005648_020 0.0816829846 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
5 Hb_005144_150 0.0837472858 - - hypothetical protein VITISV_013572 [Vitis vinifera]
6 Hb_002616_020 0.0847265143 - - PREDICTED: peroxidase 3 [Jatropha curcas]
7 Hb_000352_360 0.0873613793 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_002701_030 0.0933744242 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_000163_170 0.0941498389 - - -
10 Hb_000344_030 0.0960556146 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
11 Hb_003607_080 0.0967626771 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
12 Hb_003607_090 0.0978432181 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
13 Hb_000813_020 0.0992439986 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
14 Hb_002600_120 0.100867437 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
15 Hb_010863_020 0.1014888578 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
16 Hb_003090_220 0.1026504121 - - PREDICTED: copper transporter 4 [Jatropha curcas]
17 Hb_004531_160 0.1034826496 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
18 Hb_008731_010 0.1073899417 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
19 Hb_002014_130 0.1075846851 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000093_010 0.1082180997 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]

Gene co-expression network

sample Hb_003849_170 Hb_003849_170 Hb_001257_140 Hb_001257_140 Hb_003849_170--Hb_001257_140 Hb_170077_020 Hb_170077_020 Hb_003849_170--Hb_170077_020 Hb_005648_020 Hb_005648_020 Hb_003849_170--Hb_005648_020 Hb_005144_150 Hb_005144_150 Hb_003849_170--Hb_005144_150 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_000352_360 Hb_000352_360 Hb_003849_170--Hb_000352_360 Hb_001257_140--Hb_005144_150 Hb_001257_140--Hb_000352_360 Hb_010863_020 Hb_010863_020 Hb_001257_140--Hb_010863_020 Hb_001257_140--Hb_170077_020 Hb_003858_070 Hb_003858_070 Hb_001257_140--Hb_003858_070 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_170077_020--Hb_005648_020 Hb_170077_020--Hb_000352_360 Hb_003607_080 Hb_003607_080 Hb_170077_020--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_000093_010 Hb_000093_010 Hb_005648_020--Hb_000093_010 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_005144_150--Hb_017061_010 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_002616_020--Hb_000352_360 Hb_002869_090 Hb_002869_090 Hb_002616_020--Hb_002869_090 Hb_027400_020 Hb_027400_020 Hb_002616_020--Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_002616_020--Hb_000076_280 Hb_000419_140 Hb_000419_140 Hb_002616_020--Hb_000419_140 Hb_000352_360--Hb_002869_090 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166256 4.15379 12.9071 76.634 0.158109 0.158666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.22274 12.7939

CAGE analysis