Hb_003849_210

Information

Type transcription factor
Description TF Family: ERF
Location Contig3849: 160731-161960
Sequence    

Annotation

kegg
ID rcu:RCOM_0793640
description hypothetical protein
nr
ID XP_002530032.1
description hypothetical protein RCOM_0793640 [Ricinus communis]
swissprot
ID Q9FYK5
description Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1
trembl
ID B9SVL3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793640 PE=4 SV=1
Gene Ontology
ID GO:0003677
description erf61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_210 0.0 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
2 Hb_010128_140 0.0025460028 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
3 Hb_001552_010 0.006017761 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015447_010 0.0062720279 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
5 Hb_005356_020 0.0067471123 - - glutaredoxin, grx, putative [Ricinus communis]
6 Hb_006198_160 0.0084822492 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
7 Hb_003687_060 0.0104549076 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003038_020 0.0111812963 - - unnamed protein product [Coffea canephora]
9 Hb_005333_090 0.0119396006 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
10 Hb_101724_010 0.0137479435 - - glutamate receptor family protein [Populus trichocarpa]
11 Hb_093541_010 0.014792671 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004899_240 0.0152344115 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000087_110 0.0167561635 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002157_110 0.0183033153 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
15 Hb_005081_050 0.023576368 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
16 Hb_036116_010 0.0236667738 - - JHL22C18.10 [Jatropha curcas]
17 Hb_090521_010 0.0253763171 - - Major allergen Pru ar, putative [Ricinus communis]
18 Hb_073680_010 0.0254282782 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
19 Hb_157950_010 0.0255410813 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
20 Hb_003424_040 0.0268341971 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003849_210 Hb_003849_210 Hb_010128_140 Hb_010128_140 Hb_003849_210--Hb_010128_140 Hb_001552_010 Hb_001552_010 Hb_003849_210--Hb_001552_010 Hb_015447_010 Hb_015447_010 Hb_003849_210--Hb_015447_010 Hb_005356_020 Hb_005356_020 Hb_003849_210--Hb_005356_020 Hb_006198_160 Hb_006198_160 Hb_003849_210--Hb_006198_160 Hb_003687_060 Hb_003687_060 Hb_003849_210--Hb_003687_060 Hb_010128_140--Hb_001552_010 Hb_010128_140--Hb_005356_020 Hb_010128_140--Hb_003687_060 Hb_003038_020 Hb_003038_020 Hb_010128_140--Hb_003038_020 Hb_010128_140--Hb_015447_010 Hb_001552_010--Hb_005356_020 Hb_001552_010--Hb_003687_060 Hb_001552_010--Hb_003038_020 Hb_005333_090 Hb_005333_090 Hb_001552_010--Hb_005333_090 Hb_015447_010--Hb_006198_160 Hb_101724_010 Hb_101724_010 Hb_015447_010--Hb_101724_010 Hb_093541_010 Hb_093541_010 Hb_015447_010--Hb_093541_010 Hb_000087_110 Hb_000087_110 Hb_015447_010--Hb_000087_110 Hb_005356_020--Hb_003687_060 Hb_005356_020--Hb_003038_020 Hb_005356_020--Hb_005333_090 Hb_006198_160--Hb_101724_010 Hb_006198_160--Hb_093541_010 Hb_006198_160--Hb_000087_110 Hb_006198_160--Hb_010128_140 Hb_003687_060--Hb_003038_020 Hb_003687_060--Hb_005333_090 Hb_004899_240 Hb_004899_240 Hb_003687_060--Hb_004899_240 Hb_002157_110 Hb_002157_110 Hb_003687_060--Hb_002157_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0128735 0.0992708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis