Hb_003851_050

Information

Type -
Description -
Location Contig3851: 40949-44330
Sequence    

Annotation

kegg
ID rcu:RCOM_0786860
description oligopeptide transporter, putative
nr
ID XP_002532101.1
description oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q9SHY2
description Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1
trembl
ID B9T1I2
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_0786860 PE=4 SV=1
Gene Ontology
ID GO:0055085
description probable metal-nicotianamine transporter ysl7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003851_050 0.0 - - oligopeptide transporter, putative [Ricinus communis]
2 Hb_002067_110 0.1015575511 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
3 Hb_003344_020 0.1047112435 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
4 Hb_001659_030 0.1047151576 - - -
5 Hb_123238_010 0.104739009 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
6 Hb_080293_010 0.1048666398 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
7 Hb_000002_160 0.1051907105 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
8 Hb_187024_020 0.1063603015 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
9 Hb_007259_030 0.1098363762 - - -
10 Hb_185340_020 0.1099216333 - - -
11 Hb_001136_140 0.1106524719 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
12 Hb_004944_030 0.1109293234 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_039814_010 0.1110331095 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
14 Hb_072149_010 0.1114977184 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
15 Hb_002400_110 0.1115805928 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008248_010 0.1125306137 - - -
17 Hb_188168_010 0.1130462944 - - Arylacetamide deacetylase, putative [Ricinus communis]
18 Hb_001100_020 0.113461518 - - -
19 Hb_007785_020 0.1139124545 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_010452_030 0.1139720271 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]

Gene co-expression network

sample Hb_003851_050 Hb_003851_050 Hb_002067_110 Hb_002067_110 Hb_003851_050--Hb_002067_110 Hb_003344_020 Hb_003344_020 Hb_003851_050--Hb_003344_020 Hb_001659_030 Hb_001659_030 Hb_003851_050--Hb_001659_030 Hb_123238_010 Hb_123238_010 Hb_003851_050--Hb_123238_010 Hb_080293_010 Hb_080293_010 Hb_003851_050--Hb_080293_010 Hb_000002_160 Hb_000002_160 Hb_003851_050--Hb_000002_160 Hb_000844_020 Hb_000844_020 Hb_002067_110--Hb_000844_020 Hb_007785_020 Hb_007785_020 Hb_002067_110--Hb_007785_020 Hb_066262_020 Hb_066262_020 Hb_002067_110--Hb_066262_020 Hb_064855_010 Hb_064855_010 Hb_002067_110--Hb_064855_010 Hb_045810_010 Hb_045810_010 Hb_002067_110--Hb_045810_010 Hb_001271_040 Hb_001271_040 Hb_002067_110--Hb_001271_040 Hb_003344_020--Hb_001659_030 Hb_003344_020--Hb_123238_010 Hb_003344_020--Hb_080293_010 Hb_003344_020--Hb_000002_160 Hb_187024_020 Hb_187024_020 Hb_003344_020--Hb_187024_020 Hb_007259_030 Hb_007259_030 Hb_003344_020--Hb_007259_030 Hb_001659_030--Hb_123238_010 Hb_001659_030--Hb_080293_010 Hb_001659_030--Hb_000002_160 Hb_001659_030--Hb_187024_020 Hb_001659_030--Hb_007259_030 Hb_123238_010--Hb_080293_010 Hb_123238_010--Hb_000002_160 Hb_123238_010--Hb_187024_020 Hb_123238_010--Hb_007259_030 Hb_080293_010--Hb_000002_160 Hb_080293_010--Hb_187024_020 Hb_001136_140 Hb_001136_140 Hb_080293_010--Hb_001136_140 Hb_000002_160--Hb_187024_020 Hb_000002_160--Hb_001136_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34847 0 0.0135106 0 0.0253062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.396909 0

CAGE analysis