Hb_003854_020

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig3854: 59090-62913
Sequence    

Annotation

kegg
ID rcu:RCOM_0434530
description protein with unknown function
nr
ID XP_002533942.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0434530 PE=4 SV=1
Gene Ontology
ID GO:0005622
description platz transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003854_020 0.0 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
2 Hb_059641_010 0.1758233566 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_000123_030 0.1760284858 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_009848_020 0.1789619738 - - hypothetical protein VITISV_026702 [Vitis vinifera]
5 Hb_000136_190 0.1897245352 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
6 Hb_144550_020 0.1926189534 - - -
7 Hb_003060_050 0.1930774577 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
8 Hb_003814_030 0.1948169324 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
9 Hb_012395_080 0.2055625811 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
10 Hb_000330_160 0.2096396157 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
11 Hb_001103_070 0.2110188016 - - Patellin-3, putative [Ricinus communis]
12 Hb_001004_120 0.217116027 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
13 Hb_006913_050 0.2174113963 - - -
14 Hb_049958_010 0.21971268 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_003376_260 0.2252668557 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
16 Hb_002370_030 0.2272829066 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
17 Hb_084470_010 0.2284838433 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_007481_030 0.2306127063 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
19 Hb_005144_030 0.2307537022 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
20 Hb_002370_040 0.2351239842 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]

Gene co-expression network

sample Hb_003854_020 Hb_003854_020 Hb_059641_010 Hb_059641_010 Hb_003854_020--Hb_059641_010 Hb_000123_030 Hb_000123_030 Hb_003854_020--Hb_000123_030 Hb_009848_020 Hb_009848_020 Hb_003854_020--Hb_009848_020 Hb_000136_190 Hb_000136_190 Hb_003854_020--Hb_000136_190 Hb_144550_020 Hb_144550_020 Hb_003854_020--Hb_144550_020 Hb_003060_050 Hb_003060_050 Hb_003854_020--Hb_003060_050 Hb_049958_010 Hb_049958_010 Hb_059641_010--Hb_049958_010 Hb_000571_150 Hb_000571_150 Hb_059641_010--Hb_000571_150 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_059641_010--Hb_144550_020 Hb_059641_010--Hb_000123_030 Hb_000123_020 Hb_000123_020 Hb_000123_030--Hb_000123_020 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_000123_030--Hb_049958_010 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020 Hb_084470_010 Hb_084470_010 Hb_009848_020--Hb_084470_010 Hb_009848_020--Hb_059641_010 Hb_009848_020--Hb_000123_030 Hb_009848_020--Hb_144550_020 Hb_000330_160 Hb_000330_160 Hb_009848_020--Hb_000330_160 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_002370_040 Hb_002370_040 Hb_000136_190--Hb_002370_040 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_144550_020--Hb_000136_190 Hb_144550_020--Hb_002370_040 Hb_144550_020--Hb_000330_160 Hb_097646_010 Hb_097646_010 Hb_003060_050--Hb_097646_010 Hb_003914_030 Hb_003914_030 Hb_003060_050--Hb_003914_030 Hb_003060_050--Hb_022880_020 Hb_003001_040 Hb_003001_040 Hb_003060_050--Hb_003001_040 Hb_001103_070 Hb_001103_070 Hb_003060_050--Hb_001103_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408069 1.10825 0.250256 1.01312 0.47362 1.10538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.476588 0.297671

CAGE analysis