Hb_003855_060

Information

Type -
Description -
Location Contig3855: 47303-48943
Sequence    

Annotation

kegg
ID rcu:RCOM_0812190
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012067737.1
description PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
swissprot
ID Q8W3M4
description Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1
trembl
ID A0A067LQA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22116 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003855_060 0.0 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
2 Hb_002740_050 0.0415807593 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
3 Hb_007904_150 0.0453429082 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
4 Hb_001981_050 0.0496477867 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
5 Hb_004943_020 0.0516264736 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_000318_310 0.0622934758 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
7 Hb_185811_010 0.0633634569 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_143629_170 0.0640076447 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
9 Hb_001278_120 0.0659822639 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
10 Hb_004459_010 0.0664687202 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
11 Hb_149694_010 0.07547077 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_128986_010 0.0802782637 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002119_100 0.0820681136 - - cytochrome B561, putative [Ricinus communis]
14 Hb_000915_170 0.084855915 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
15 Hb_000329_780 0.0876988743 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
16 Hb_003417_050 0.0887137482 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000917_300 0.0887164931 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
18 Hb_007483_090 0.0905058615 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006242_050 0.0909778348 - - Osmotin precursor, putative [Ricinus communis]
20 Hb_000326_120 0.093223661 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003855_060 Hb_003855_060 Hb_002740_050 Hb_002740_050 Hb_003855_060--Hb_002740_050 Hb_007904_150 Hb_007904_150 Hb_003855_060--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_003855_060--Hb_001981_050 Hb_004943_020 Hb_004943_020 Hb_003855_060--Hb_004943_020 Hb_000318_310 Hb_000318_310 Hb_003855_060--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_003855_060--Hb_185811_010 Hb_002740_050--Hb_007904_150 Hb_143629_170 Hb_143629_170 Hb_002740_050--Hb_143629_170 Hb_002119_100 Hb_002119_100 Hb_002740_050--Hb_002119_100 Hb_149694_010 Hb_149694_010 Hb_002740_050--Hb_149694_010 Hb_000329_780 Hb_000329_780 Hb_002740_050--Hb_000329_780 Hb_007904_150--Hb_001981_050 Hb_007904_150--Hb_000318_310 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_007904_150--Hb_185811_010 Hb_001981_050--Hb_185811_010 Hb_001981_050--Hb_000318_310 Hb_004459_010 Hb_004459_010 Hb_001981_050--Hb_004459_010 Hb_000917_300 Hb_000917_300 Hb_001981_050--Hb_000917_300 Hb_001278_120 Hb_001278_120 Hb_004943_020--Hb_001278_120 Hb_000343_070 Hb_000343_070 Hb_004943_020--Hb_000343_070 Hb_004943_020--Hb_143629_170 Hb_004943_020--Hb_007904_150 Hb_004943_020--Hb_004459_010 Hb_000318_310--Hb_185811_010 Hb_000318_310--Hb_000917_300 Hb_000318_310--Hb_004459_010 Hb_001345_050 Hb_001345_050 Hb_185811_010--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_185811_010--Hb_072771_010 Hb_004807_010 Hb_004807_010 Hb_185811_010--Hb_004807_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0871392 1.48419 58.8094 111.253 0 0.110714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.97784 109.507

CAGE analysis