Hb_003858_040

Information

Type -
Description -
Location Contig3858: 35597-37523
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14590g
description POPTRDRAFT_718007; hypothetical protein
nr
ID XP_002310877.2
description hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
swissprot
ID P46604
description Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1
trembl
ID B9HFT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14590g PE=4 SV=2
Gene Ontology
ID GO:0003677
description homeobox-leucine zipper protein hat22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_040 0.0 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
2 Hb_000009_480 0.0870059881 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
3 Hb_073973_160 0.0908370185 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_001050_010 0.0923183901 - - Advillin [Gossypium arboreum]
5 Hb_000868_060 0.0967712643 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
6 Hb_000002_490 0.1003896943 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
7 Hb_001396_280 0.1008257196 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
8 Hb_002311_070 0.1011267286 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
9 Hb_009485_020 0.1056793751 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
10 Hb_001882_040 0.1067735104 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
11 Hb_162378_010 0.1108235691 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
12 Hb_001501_060 0.1120332745 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003050_370 0.1149137345 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
14 Hb_000395_020 0.1150348581 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
15 Hb_008556_030 0.1152762594 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
16 Hb_000416_050 0.1156773332 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
17 Hb_000480_010 0.1164411 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011609_170 0.1171405717 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
19 Hb_003680_230 0.1173541839 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_000933_020 0.1176019925 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003858_040 Hb_003858_040 Hb_000009_480 Hb_000009_480 Hb_003858_040--Hb_000009_480 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_001050_010 Hb_001050_010 Hb_003858_040--Hb_001050_010 Hb_000868_060 Hb_000868_060 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_001396_280 Hb_001396_280 Hb_003858_040--Hb_001396_280 Hb_000009_480--Hb_000868_060 Hb_000270_630 Hb_000270_630 Hb_000009_480--Hb_000270_630 Hb_080313_010 Hb_080313_010 Hb_000009_480--Hb_080313_010 Hb_003747_010 Hb_003747_010 Hb_000009_480--Hb_003747_010 Hb_001140_350 Hb_001140_350 Hb_000009_480--Hb_001140_350 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_001910_020 Hb_001910_020 Hb_073973_160--Hb_001910_020 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_002320_070 Hb_002320_070 Hb_073973_160--Hb_002320_070 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320 Hb_001050_010--Hb_000868_060 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000868_060--Hb_000395_020 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_029866_100 Hb_029866_100 Hb_001396_280--Hb_029866_100 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_000392_370 Hb_000392_370 Hb_001396_280--Hb_000392_370 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8251 23.6031 27.6577 40.2465 46.4658 39.1689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8912 11.9382 13.6042 18.366 9.21466

CAGE analysis