Hb_003858_070

Information

Type -
Description -
Location Contig3858: 88673-105206
Sequence    

Annotation

kegg
ID tcc:TCM_026086
description Germin-like protein subfamily 1 member 18
nr
ID XP_012089493.1
description PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
swissprot
ID Q9FIC6
description Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1
trembl
ID A0A0E0QF97
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_070 0.0 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
2 Hb_001006_300 0.0537970033 - - lipid binding protein, putative [Ricinus communis]
3 Hb_017061_010 0.0654056537 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
4 Hb_005144_150 0.0661413718 - - hypothetical protein VITISV_013572 [Vitis vinifera]
5 Hb_013399_060 0.0688629028 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
6 Hb_180088_010 0.0796608474 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_010863_020 0.0805090672 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
8 Hb_001257_140 0.0837345311 - - Gb:AAF02129.1, putative [Theobroma cacao]
9 Hb_001898_030 0.0848872454 - - protein kinase-coding resistance protein [Nicotiana repanda]
10 Hb_000964_120 0.0942289518 - - DNA-damage-inducible protein f, putative [Ricinus communis]
11 Hb_003598_050 0.0948591119 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_000497_080 0.0993588131 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000813_020 0.0996293889 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
14 Hb_006351_050 0.0996563269 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
15 Hb_000959_170 0.1036353278 - - Cell division protein kinase 7, putative [Ricinus communis]
16 Hb_002014_130 0.1051085863 - - conserved hypothetical protein [Ricinus communis]
17 Hb_112950_010 0.1077046544 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
18 Hb_135757_030 0.1077518973 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
19 Hb_001500_020 0.1091938306 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002304_110 0.1094491326 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]

Gene co-expression network

sample Hb_003858_070 Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_003858_070--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_003858_070--Hb_017061_010 Hb_005144_150 Hb_005144_150 Hb_003858_070--Hb_005144_150 Hb_013399_060 Hb_013399_060 Hb_003858_070--Hb_013399_060 Hb_180088_010 Hb_180088_010 Hb_003858_070--Hb_180088_010 Hb_010863_020 Hb_010863_020 Hb_003858_070--Hb_010863_020 Hb_001006_300--Hb_017061_010 Hb_001898_030 Hb_001898_030 Hb_001006_300--Hb_001898_030 Hb_001006_300--Hb_013399_060 Hb_000964_120 Hb_000964_120 Hb_001006_300--Hb_000964_120 Hb_001006_300--Hb_005144_150 Hb_017061_010--Hb_001898_030 Hb_017061_010--Hb_000964_120 Hb_017061_010--Hb_005144_150 Hb_000497_080 Hb_000497_080 Hb_017061_010--Hb_000497_080 Hb_001257_140 Hb_001257_140 Hb_005144_150--Hb_001257_140 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_005144_150--Hb_001898_030 Hb_013399_060--Hb_010863_020 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_013399_060--Hb_180088_010 Hb_001296_010 Hb_001296_010 Hb_013399_060--Hb_001296_010 Hb_006351_050 Hb_006351_050 Hb_180088_010--Hb_006351_050 Hb_001500_020 Hb_001500_020 Hb_180088_010--Hb_001500_020 Hb_007919_010 Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_112950_010 Hb_112950_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_180088_010--Hb_003598_050 Hb_010863_020--Hb_001257_140 Hb_010863_020--Hb_001296_010 Hb_011344_050 Hb_011344_050 Hb_010863_020--Hb_011344_050 Hb_010863_020--Hb_001006_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0447522 0.0929567 0.849316 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0321208 0.0849091

CAGE analysis