Hb_003859_010

Information

Type -
Description -
Location Contig3859: 47137-55734
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID A0A061FHX3
description Uncharacterized protein (Fragment) OS=Theobroma cacao GN=TCM_033266 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003859_010 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_001523_010 0.1339211333 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
3 Hb_000466_060 0.1448498191 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_005217_020 0.1479295942 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
5 Hb_000213_060 0.1628627982 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
6 Hb_002837_070 0.1664333308 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
7 Hb_000441_230 0.166906768 - - unnamed protein product [Coffea canephora]
8 Hb_001259_030 0.1679980004 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
9 Hb_181320_010 0.1687774285 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
10 Hb_010189_010 0.1688050711 - - -
11 Hb_000172_530 0.1699209526 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
12 Hb_004254_040 0.1776141477 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
13 Hb_001565_100 0.1784145349 - - unnamed protein product [Coffea canephora]
14 Hb_000792_110 0.1785502534 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
15 Hb_000352_130 0.178665509 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
16 Hb_001178_060 0.179043845 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
17 Hb_074683_020 0.1795226823 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
18 Hb_025048_040 0.1799102242 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
19 Hb_004206_040 0.1806121728 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000613_020 0.1821794176 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_003859_010 Hb_003859_010 Hb_001523_010 Hb_001523_010 Hb_003859_010--Hb_001523_010 Hb_000466_060 Hb_000466_060 Hb_003859_010--Hb_000466_060 Hb_005217_020 Hb_005217_020 Hb_003859_010--Hb_005217_020 Hb_000213_060 Hb_000213_060 Hb_003859_010--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_003859_010--Hb_002837_070 Hb_000441_230 Hb_000441_230 Hb_003859_010--Hb_000441_230 Hb_001523_010--Hb_000466_060 Hb_000172_530 Hb_000172_530 Hb_001523_010--Hb_000172_530 Hb_113216_010 Hb_113216_010 Hb_001523_010--Hb_113216_010 Hb_005016_030 Hb_005016_030 Hb_001523_010--Hb_005016_030 Hb_000270_450 Hb_000270_450 Hb_001523_010--Hb_000270_450 Hb_001825_010 Hb_001825_010 Hb_001523_010--Hb_001825_010 Hb_000466_060--Hb_000172_530 Hb_000466_060--Hb_113216_010 Hb_000466_060--Hb_000213_060 Hb_000466_060--Hb_002837_070 Hb_000016_180 Hb_000016_180 Hb_000466_060--Hb_000016_180 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_005217_020--Hb_002837_070 Hb_005217_020--Hb_000270_450 Hb_005217_020--Hb_001523_010 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_000213_060--Hb_113216_010 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070 Hb_061256_030 Hb_061256_030 Hb_002837_070--Hb_061256_030 Hb_002837_070--Hb_113216_010 Hb_002837_070--Hb_010189_010 Hb_174865_050 Hb_174865_050 Hb_002837_070--Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_002837_070--Hb_000212_280 Hb_000211_090 Hb_000211_090 Hb_002837_070--Hb_000211_090 Hb_000329_540 Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000580_060 Hb_000580_060 Hb_000441_230--Hb_000580_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97008 0.450242 0.0668417 0.0744341 1.00558 2.3437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.450013 0.353861 0.0917435 0.0817442 0

CAGE analysis