Hb_003861_050

Information

Type -
Description -
Location Contig3861: 50905-54784
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30210g
description POPTRDRAFT_829849; radical SAM domain-containing family protein
nr
ID XP_012093120.1
description PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
swissprot
ID Q6MDD0
description Probable dual-specificity RNA methyltransferase RlmN 2 OS=Protochlamydia amoebophila (strain UWE25) GN=rlmN2 PE=3 SV=2
trembl
ID A0A067LIN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16328 PE=4 SV=1
Gene Ontology
ID GO:0005737
description radical sam superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38835: 51011-54816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_050 0.0 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
2 Hb_005867_070 0.0451179467 - - DNA binding protein, putative [Ricinus communis]
3 Hb_004994_010 0.0475862382 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
4 Hb_002889_010 0.0537409948 - - ubx domain-containing, putative [Ricinus communis]
5 Hb_001377_310 0.0553062023 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
6 Hb_002805_190 0.0590450373 - - spliceosome associated protein, putative [Ricinus communis]
7 Hb_015807_050 0.0609701864 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
8 Hb_013399_020 0.0615824808 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
9 Hb_000339_040 0.0619463351 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
10 Hb_000976_140 0.0622432648 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
11 Hb_000011_100 0.0623392099 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
12 Hb_001153_210 0.0635194628 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
13 Hb_001226_150 0.0642452982 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
14 Hb_000035_470 0.065167948 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_005779_010 0.0656288966 - - catalytic, putative [Ricinus communis]
16 Hb_001408_140 0.065645288 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
17 Hb_000170_090 0.0657099484 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
18 Hb_000359_040 0.0658575844 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002986_100 0.0658970012 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_005730_040 0.0663186836 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]

Gene co-expression network

sample Hb_003861_050 Hb_003861_050 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_001377_310 Hb_001377_310 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_004994_010--Hb_000339_040 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_000398_080 Hb_000398_080 Hb_002805_190--Hb_000398_080 Hb_005289_040 Hb_005289_040 Hb_002805_190--Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_002805_190--Hb_003638_090 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_002805_190--Hb_001377_310 Hb_000313_220 Hb_000313_220 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_109980_010 Hb_109980_010 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26281 7.58871 9.58909 7.3544 8.2178 8.12864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.49554 6.19145 5.67028 7.80122 6.48103

CAGE analysis