Hb_003861_060

Information

Type -
Description -
Location Contig3861: 55249-59520
Sequence    

Annotation

kegg
ID rcu:RCOM_0175730
description hypothetical protein
nr
ID XP_012093122.1
description PREDICTED: treacle protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16329 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38836: 55242-59449 , PASA_asmbl_38837: 55254-59457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_060 0.0 - - PREDICTED: treacle protein [Jatropha curcas]
2 Hb_014834_150 0.0421673781 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_004052_080 0.053352333 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003428_010 0.0535908245 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
5 Hb_003513_010 0.0570852869 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
6 Hb_164390_010 0.0573790489 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
7 Hb_000392_420 0.0583391264 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
8 Hb_000365_230 0.0602412291 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
9 Hb_000339_040 0.0609926887 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
10 Hb_003878_090 0.0615790636 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
11 Hb_171900_090 0.0620427499 - - conserved hypothetical protein [Ricinus communis]
12 Hb_062226_130 0.063216888 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
13 Hb_005588_080 0.0646157403 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
14 Hb_007894_150 0.0658456368 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
15 Hb_000789_320 0.0676147829 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
16 Hb_001456_060 0.0680708391 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
17 Hb_007007_120 0.0693924074 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
18 Hb_000816_250 0.0696922157 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
19 Hb_009296_070 0.0709104868 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
20 Hb_002849_130 0.0713635928 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003861_060 Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003861_060--Hb_014834_150 Hb_004052_080 Hb_004052_080 Hb_003861_060--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_003861_060--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_003861_060--Hb_003513_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_014834_150--Hb_003428_010 Hb_014834_150--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_004052_080--Hb_003513_010 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230 Hb_004052_080--Hb_003428_010 Hb_003428_010--Hb_007007_120 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003513_010--Hb_007007_120 Hb_000365_230 Hb_000365_230 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7858 26.9665 46.7015 32.8565 23.5922 24.2823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5941 37.2132 28.476 29.5779 30.8955

CAGE analysis