Hb_003861_080

Information

Type -
Description -
Location Contig3861: 73937-79461
Sequence    

Annotation

kegg
ID tcc:TCM_007231
description DNA/RNA polymerases superfamily protein isoform 1
nr
ID XP_012093125.1
description PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
swissprot
ID O74944
description DNA polymerase kappa OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug40 PE=1 SV=3
trembl
ID A0A067LB79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16331 PE=3 SV=1
Gene Ontology
ID GO:0003684
description dna polymerase kappa isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38840: 73822-78008 , PASA_asmbl_38841: 75102-76780 , PASA_asmbl_38842: 78290-78982
cDNA
(Sanger)
(ID:Location)		 017_G12.ab1: 75111-78008

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_080 0.0 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
2 Hb_004046_010 0.0796961899 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
3 Hb_000110_160 0.0812537699 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001635_100 0.0841445717 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
5 Hb_007943_080 0.0861647 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
6 Hb_000805_090 0.0866926383 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
7 Hb_001157_030 0.0877010235 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
8 Hb_005062_070 0.087823333 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_009382_020 0.0887908675 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
10 Hb_178968_110 0.0933632964 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
11 Hb_006501_040 0.0949119594 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
12 Hb_000179_210 0.0956303489 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
13 Hb_000776_110 0.0958591877 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
14 Hb_000134_350 0.0960642632 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
15 Hb_002890_280 0.0973796748 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
16 Hb_000190_140 0.099056961 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
17 Hb_000754_060 0.1008282636 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_000358_080 0.1008405068 - - Ribonuclease 3 [Gossypium arboreum]
19 Hb_000500_040 0.1029442983 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000421_260 0.102955688 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003861_080 Hb_003861_080 Hb_004046_010 Hb_004046_010 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_007943_080 Hb_007943_080 Hb_003861_080--Hb_007943_080 Hb_000805_090 Hb_000805_090 Hb_003861_080--Hb_000805_090 Hb_001157_030 Hb_001157_030 Hb_003861_080--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090 Hb_001329_300 Hb_001329_300 Hb_000110_160--Hb_001329_300 Hb_008066_010 Hb_008066_010 Hb_000110_160--Hb_008066_010 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000567_260 Hb_000567_260 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_001635_100--Hb_005062_070 Hb_000030_010 Hb_000030_010 Hb_001635_100--Hb_000030_010 Hb_003297_030 Hb_003297_030 Hb_001635_100--Hb_003297_030 Hb_001635_100--Hb_004046_010 Hb_001635_100--Hb_002477_160 Hb_000358_080 Hb_000358_080 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_001981_090 Hb_001981_090 Hb_000805_090--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_000805_090--Hb_002357_040 Hb_000809_040 Hb_000809_040 Hb_000805_090--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_000805_090--Hb_011174_070 Hb_002890_280 Hb_002890_280 Hb_001157_030--Hb_002890_280 Hb_009382_020 Hb_009382_020 Hb_001157_030--Hb_009382_020 Hb_001157_030--Hb_001981_090 Hb_001157_030--Hb_000805_090 Hb_006501_040 Hb_006501_040 Hb_001157_030--Hb_006501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1064 6.47851 1.9909 1.27727 11.0576 14.3877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4241 10.9672 20.6951 6.07577 2.6639

CAGE analysis