Hb_003862_040

Information

Type -
Description -
Location Contig3862: 37581-40161
Sequence    

Annotation

kegg
ID rcu:RCOM_0969810
description Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative
nr
ID XP_002524427.1
description Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P19954
description Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 SV=2
trembl
ID B9SEK8
description Plastid-specific 30S ribosomal protein 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0969810 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosome-binding factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38844: 37581-39970 , PASA_asmbl_38845: 37608-39970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003862_040 0.0 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_001638_310 0.1082825419 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
3 Hb_005000_060 0.1298794098 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
4 Hb_006846_160 0.1304672732 - - electron transporter, putative [Ricinus communis]
5 Hb_000031_100 0.1382784296 - - amine oxidase, putative [Ricinus communis]
6 Hb_148146_010 0.1443583079 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
7 Hb_000934_260 0.146380444 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_001999_260 0.147536799 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
9 Hb_000146_030 0.1491622249 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
10 Hb_172632_060 0.1512532403 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
11 Hb_137600_010 0.1523681254 - - 50S ribosomal protein L1p, putative [Ricinus communis]
12 Hb_000056_310 0.1568458176 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
13 Hb_000322_040 0.1587733422 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
14 Hb_002232_380 0.1595108611 - - malate dehydrogenase, putative [Ricinus communis]
15 Hb_000684_430 0.1599125816 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
16 Hb_000802_050 0.1599317075 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
17 Hb_003376_390 0.1599922164 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
18 Hb_004117_040 0.1604698886 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
19 Hb_003664_030 0.1605525769 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
20 Hb_001047_180 0.1619070083 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003862_040 Hb_003862_040 Hb_001638_310 Hb_001638_310 Hb_003862_040--Hb_001638_310 Hb_005000_060 Hb_005000_060 Hb_003862_040--Hb_005000_060 Hb_006846_160 Hb_006846_160 Hb_003862_040--Hb_006846_160 Hb_000031_100 Hb_000031_100 Hb_003862_040--Hb_000031_100 Hb_148146_010 Hb_148146_010 Hb_003862_040--Hb_148146_010 Hb_000934_260 Hb_000934_260 Hb_003862_040--Hb_000934_260 Hb_000574_470 Hb_000574_470 Hb_001638_310--Hb_000574_470 Hb_001711_060 Hb_001711_060 Hb_001638_310--Hb_001711_060 Hb_000094_100 Hb_000094_100 Hb_001638_310--Hb_000094_100 Hb_172632_060 Hb_172632_060 Hb_001638_310--Hb_172632_060 Hb_000056_310 Hb_000056_310 Hb_001638_310--Hb_000056_310 Hb_001999_260 Hb_001999_260 Hb_005000_060--Hb_001999_260 Hb_000146_030 Hb_000146_030 Hb_005000_060--Hb_000146_030 Hb_005000_060--Hb_148146_010 Hb_004208_090 Hb_004208_090 Hb_005000_060--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_005000_060--Hb_006583_030 Hb_050514_020 Hb_050514_020 Hb_005000_060--Hb_050514_020 Hb_002498_170 Hb_002498_170 Hb_006846_160--Hb_002498_170 Hb_006846_160--Hb_000934_260 Hb_000322_040 Hb_000322_040 Hb_006846_160--Hb_000322_040 Hb_006252_030 Hb_006252_030 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_000031_100--Hb_050514_020 Hb_000031_100--Hb_006846_160 Hb_003664_030 Hb_003664_030 Hb_000031_100--Hb_003664_030 Hb_002799_130 Hb_002799_130 Hb_000031_100--Hb_002799_130 Hb_001343_020 Hb_001343_020 Hb_000031_100--Hb_001343_020 Hb_148146_010--Hb_000056_310 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_000934_260--Hb_004208_090 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000934_260--Hb_000322_040 Hb_000934_260--Hb_001999_260 Hb_000934_260--Hb_050514_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5491 29.031 138.775 33.5439 34.2836 7.55663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.25839 20.0538 10.4202 4.65271 138.14

CAGE analysis