Hb_003862_050

Information

Type transcription factor
Description TF Family: mTERF
Location Contig3862: 41334-43053
Sequence    

Annotation

kegg
ID rcu:RCOM_0955320
description hypothetical protein
nr
ID XP_012080885.1
description PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RQ52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0955320 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003862_050 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
2 Hb_000175_460 0.0531778476 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_019654_100 0.0655145988 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
4 Hb_007813_040 0.0682560918 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
5 Hb_005348_140 0.0781853465 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
6 Hb_002496_030 0.0786069483 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
7 Hb_000010_400 0.0806967731 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
8 Hb_126643_020 0.082340335 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
9 Hb_000123_120 0.0829136035 - - actin depolymerizing factor 4 [Hevea brasiliensis]
10 Hb_000063_140 0.0837732046 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
11 Hb_000008_470 0.0847165919 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
12 Hb_002105_040 0.085502186 - - -
13 Hb_001617_050 0.0887691856 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
14 Hb_000120_950 0.0891133987 - - PREDICTED: protein GRIP [Jatropha curcas]
15 Hb_000754_060 0.0900685539 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
16 Hb_007951_060 0.0910952043 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_000030_300 0.0912736927 - - Thioredoxin, putative [Ricinus communis]
18 Hb_004204_170 0.0930917628 - - synaptosomal associated protein, putative [Ricinus communis]
19 Hb_000453_170 0.0933927641 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001305_010 0.0939922155 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003862_050 Hb_003862_050 Hb_000175_460 Hb_000175_460 Hb_003862_050--Hb_000175_460 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_002105_040 Hb_002105_040 Hb_000175_460--Hb_002105_040 Hb_000510_320 Hb_000510_320 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000876_070 Hb_000876_070 Hb_000175_460--Hb_000876_070 Hb_000754_060 Hb_000754_060 Hb_019654_100--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_019654_100--Hb_000120_950 Hb_010795_010 Hb_010795_010 Hb_019654_100--Hb_010795_010 Hb_175338_030 Hb_175338_030 Hb_019654_100--Hb_175338_030 Hb_000436_070 Hb_000436_070 Hb_019654_100--Hb_000436_070 Hb_007813_040--Hb_000010_400 Hb_002620_010 Hb_002620_010 Hb_007813_040--Hb_002620_010 Hb_007813_040--Hb_000175_460 Hb_000318_190 Hb_000318_190 Hb_007813_040--Hb_000318_190 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_005348_140--Hb_000175_460 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64716 1.32418 1.40427 1.06399 1.91364 1.92873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77562 1.83933 3.33031 1.15168 0.732024

CAGE analysis