Hb_003866_020

Information

Type -
Description -
Location Contig3866: 39504-44150
Sequence    

Annotation

kegg
ID rcu:RCOM_0238700
description hypothetical protein
nr
ID XP_002528165.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q641I1
description Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1
trembl
ID B9SQ96
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0238700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38852: 22333-44661 , PASA_asmbl_38853: 22333-40213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003866_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000227_380 0.055467721 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
3 Hb_006588_050 0.0779931071 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
4 Hb_006816_300 0.0800627747 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_004899_070 0.0806976117 - - PREDICTED: RRP12-like protein [Jatropha curcas]
6 Hb_000239_070 0.0810709695 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
7 Hb_000340_160 0.0812641 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
8 Hb_000002_440 0.0813461201 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
9 Hb_000313_340 0.0825225203 - - DNA repair protein xp-E, putative [Ricinus communis]
10 Hb_007849_020 0.0846474172 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_002105_080 0.0847167239 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000594_020 0.0852575672 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
13 Hb_148209_020 0.085504297 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
14 Hb_004225_130 0.0881372975 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
15 Hb_000640_200 0.0894235203 - - hypothetical protein RCOM_1346600 [Ricinus communis]
16 Hb_175338_020 0.0898497001 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_000098_130 0.0910072327 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
18 Hb_000813_100 0.0920162387 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
19 Hb_006829_090 0.0920502762 - - PREDICTED: protein MOS2 [Jatropha curcas]
20 Hb_000116_280 0.0921404431 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003866_020 Hb_003866_020 Hb_000227_380 Hb_000227_380 Hb_003866_020--Hb_000227_380 Hb_006588_050 Hb_006588_050 Hb_003866_020--Hb_006588_050 Hb_006816_300 Hb_006816_300 Hb_003866_020--Hb_006816_300 Hb_004899_070 Hb_004899_070 Hb_003866_020--Hb_004899_070 Hb_000239_070 Hb_000239_070 Hb_003866_020--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_003866_020--Hb_000340_160 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000261_290 Hb_000261_290 Hb_006588_050--Hb_000261_290 Hb_006588_050--Hb_004899_070 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_000239_070--Hb_000340_160 Hb_002883_010 Hb_002883_010 Hb_000239_070--Hb_002883_010 Hb_000331_190 Hb_000331_190 Hb_000239_070--Hb_000331_190 Hb_000239_070--Hb_175338_020 Hb_002235_320 Hb_002235_320 Hb_000239_070--Hb_002235_320 Hb_000699_250 Hb_000699_250 Hb_000340_160--Hb_000699_250 Hb_000340_160--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_000340_160--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000340_160--Hb_000567_010 Hb_125092_020 Hb_125092_020 Hb_000340_160--Hb_125092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.4819 42.8119 13.1936 9.21278 54.5183 66.4472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0441 10.453 18.1766 24.0513 9.59977

CAGE analysis