Hb_003874_010

Information

Type transcription factor
Description TF Family: B3
Location Contig3874: 2801-10458
Sequence    

Annotation

kegg
ID rcu:RCOM_1163180
description transcription factor, putative
nr
ID XP_002523945.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q6Z3U3
description B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1
trembl
ID B9SD76
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1163180 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription repressor val1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38868: 2755-7523 , PASA_asmbl_38869: 3351-4114 , PASA_asmbl_38871: 4952-5129 , PASA_asmbl_38873: 7544-10121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003874_010 0.0 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
2 Hb_000392_450 0.0945044041 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
3 Hb_003430_040 0.1045007224 - - spermidine synthase 1, putative [Ricinus communis]
4 Hb_002027_320 0.113008155 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
5 Hb_007263_010 0.1142881598 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_004517_030 0.11613058 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000300_710 0.1205857051 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
8 Hb_006555_040 0.1208901724 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
9 Hb_030545_010 0.1229256721 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
10 Hb_010080_010 0.1279315447 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
11 Hb_000140_440 0.1291529098 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
12 Hb_004957_020 0.1292413928 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004221_030 0.1315588055 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
14 Hb_000905_120 0.1321746427 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
15 Hb_000732_030 0.1323252276 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000347_140 0.1370285517 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_000959_190 0.1408356165 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
18 Hb_074792_010 0.1408852413 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
19 Hb_000211_100 0.1426745549 - - PREDICTED: biotin synthase [Jatropha curcas]
20 Hb_000438_130 0.1439696729 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003874_010 Hb_003874_010 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_003430_040 Hb_003430_040 Hb_003874_010--Hb_003430_040 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_000300_710 Hb_000300_710 Hb_003874_010--Hb_000300_710 Hb_000392_450--Hb_004517_030 Hb_000392_450--Hb_007263_010 Hb_000392_450--Hb_002027_320 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_003430_040--Hb_000300_710 Hb_002027_320--Hb_007263_010 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_007451_040 Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_007263_010--Hb_004994_080 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_007263_010--Hb_011386_050 Hb_004517_030--Hb_000212_250 Hb_004517_030--Hb_007217_010 Hb_001386_090 Hb_001386_090 Hb_004517_030--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_004517_030--Hb_003397_030 Hb_000300_710--Hb_074792_010 Hb_000300_710--Hb_000347_140 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30292 2.84497 20.8565 4.98839 1.88875 2.47851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19216 2.71755 2.32672 1.82802 4.30821

CAGE analysis