Hb_003874_020

Information

Type -
Description -
Location Contig3874: 60338-62608
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02280g
description POPTRDRAFT_661529; hypothetical protein
nr
ID XP_002318426.1
description hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I5C7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02280g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein-tyrosine sulfotransferase -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38875: 60459-62969 , PASA_asmbl_38876: 60468-62969 , PASA_asmbl_38877: 60512-62969
cDNA
(Sanger)
(ID:Location)		 019_N13.ab1: 60466-62748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003874_020 0.0 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
2 Hb_009767_120 0.062307969 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
3 Hb_004724_100 0.071228252 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
4 Hb_001279_070 0.072966008 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
5 Hb_004944_010 0.0730964421 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
6 Hb_004440_050 0.077090477 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
7 Hb_000690_080 0.0772838418 transcription factor TF Family: HB -
8 Hb_000200_210 0.0821405765 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011828_050 0.0823490963 - - 40S ribosomal protein S23, putative [Ricinus communis]
10 Hb_003266_050 0.0851896083 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
11 Hb_000933_180 0.0865118853 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
12 Hb_141131_010 0.0866237177 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
13 Hb_000163_160 0.0878916196 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
14 Hb_002105_090 0.0896359514 - - Rab4 [Hevea brasiliensis]
15 Hb_000494_020 0.0909526962 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_001369_660 0.0913569152 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
17 Hb_003058_130 0.0915890428 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
18 Hb_125000_010 0.0927059255 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
19 Hb_000065_080 0.0929024768 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
20 Hb_000457_110 0.0929823284 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003874_020 Hb_003874_020 Hb_009767_120 Hb_009767_120 Hb_003874_020--Hb_009767_120 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_000690_080 Hb_000690_080 Hb_003874_020--Hb_000690_080 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_000510_090 Hb_000510_090 Hb_004724_100--Hb_000510_090 Hb_000371_080 Hb_000371_080 Hb_004724_100--Hb_000371_080 Hb_000175_070 Hb_000175_070 Hb_004724_100--Hb_000175_070 Hb_024650_050 Hb_024650_050 Hb_004724_100--Hb_024650_050 Hb_000200_210 Hb_000200_210 Hb_004724_100--Hb_000200_210 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_007432_080 Hb_007432_080 Hb_001279_070--Hb_007432_080 Hb_000349_060 Hb_000349_060 Hb_004944_010--Hb_000349_060 Hb_004944_010--Hb_000690_080 Hb_141131_010 Hb_141131_010 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_001369_660 Hb_001369_660 Hb_004440_050--Hb_001369_660 Hb_002411_170 Hb_002411_170 Hb_004440_050--Hb_002411_170 Hb_004440_050--Hb_009767_120 Hb_001604_080 Hb_001604_080 Hb_004440_050--Hb_001604_080 Hb_010180_020 Hb_010180_020 Hb_004440_050--Hb_010180_020 Hb_000977_130 Hb_000977_130 Hb_000690_080--Hb_000977_130 Hb_000107_050 Hb_000107_050 Hb_000690_080--Hb_000107_050 Hb_000690_080--Hb_141131_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
267.621 59.4806 75.692 110.618 186.598 323.724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
275.966 323.051 108.778 82.3371 44.2446

CAGE analysis