Hb_003878_010

Information

Type -
Description -
Location Contig3878: 13775-23190
Sequence    

Annotation

kegg
ID rcu:RCOM_0937120
description cation:cation antiporter, putative
nr
ID XP_012069853.1
description PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38888: 13815-22370 , PASA_asmbl_38889: 23345-24485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_010 0.0 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
2 Hb_128048_010 0.0710107808 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
3 Hb_007875_030 0.0731801173 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
4 Hb_001814_070 0.0745999012 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
5 Hb_001454_400 0.0753236158 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
6 Hb_002105_090 0.0757994597 - - Rab4 [Hevea brasiliensis]
7 Hb_004800_230 0.0838420409 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
8 Hb_002289_120 0.0847284821 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
9 Hb_000163_160 0.0860004874 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
10 Hb_000186_190 0.0874196008 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
11 Hb_024071_020 0.0884447024 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
12 Hb_019249_010 0.0924063393 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
13 Hb_010180_010 0.0935306226 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
14 Hb_001140_370 0.0951367774 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
15 Hb_000610_050 0.0956163381 - - skp1, putative [Ricinus communis]
16 Hb_181288_010 0.0966973559 - - rac-GTP binding protein, putative [Ricinus communis]
17 Hb_002890_140 0.0971587264 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
18 Hb_003544_020 0.097227272 - - PREDICTED: elongin-A [Jatropha curcas]
19 Hb_003011_040 0.09758234 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
20 Hb_005389_150 0.0984192428 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003878_010 Hb_003878_010 Hb_128048_010 Hb_128048_010 Hb_003878_010--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_003878_010--Hb_007875_030 Hb_001814_070 Hb_001814_070 Hb_003878_010--Hb_001814_070 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_002893_050 Hb_002893_050 Hb_007875_030--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_007875_030--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_007875_030--Hb_024071_020 Hb_001047_240 Hb_001047_240 Hb_007875_030--Hb_001047_240 Hb_001140_370 Hb_001140_370 Hb_007875_030--Hb_001140_370 Hb_002289_120 Hb_002289_120 Hb_001814_070--Hb_002289_120 Hb_001814_070--Hb_128048_010 Hb_001814_070--Hb_007875_030 Hb_001016_030 Hb_001016_030 Hb_001814_070--Hb_001016_030 Hb_019249_010 Hb_019249_010 Hb_001814_070--Hb_019249_010 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_004800_230--Hb_024071_020 Hb_000163_160 Hb_000163_160 Hb_004800_230--Hb_000163_160 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_004800_230--Hb_000494_020 Hb_004800_230--Hb_001184_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1655 1.92093 2.91221 4.3484 4.2701 5.78275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81298 7.05974 2.36681 2.81982 1.12783

CAGE analysis