Hb_003878_060

Information

Type -
Description -
Location Contig3878: 58764-64670
Sequence    

Annotation

kegg
ID tcc:TCM_047066
description Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein, putative
nr
ID KJB45770.1
description hypothetical protein B456_007G326900, partial [Gossypium raimondii]
swissprot
ID Q93ZB6
description Uroporphyrinogen decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=HEME1 PE=2 SV=2
trembl
ID A0A0D2TQJ2
description Gossypium raimondii chromosome 7, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_007G326900 PE=4 SV=1
Gene Ontology
ID GO:0004853
description peptide-n4-(n-acetyl-beta-glucosaminyl)asparagine amidase a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38893: 64514-64744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_060 0.0 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
2 Hb_006060_010 0.1289026267 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
3 Hb_003599_060 0.1339771109 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_014497_070 0.1397940435 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
5 Hb_006289_020 0.1451560157 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
6 Hb_012753_150 0.1463227257 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
7 Hb_007474_020 0.1473096612 - - multicopper oxidase, putative [Ricinus communis]
8 Hb_031266_030 0.1494618473 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
9 Hb_001565_090 0.1535217075 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
10 Hb_000960_120 0.1610808711 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
11 Hb_012150_040 0.1616629665 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000956_050 0.1639676763 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
13 Hb_000028_530 0.1649766621 - - Protein regulator of cytokinesis, putative [Ricinus communis]
14 Hb_001085_160 0.1654049118 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
15 Hb_000742_180 0.1657788904 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
16 Hb_003119_040 0.1698245654 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
17 Hb_001307_020 0.1715593169 - - electron carrier, putative [Ricinus communis]
18 Hb_000142_030 0.1738026799 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_007632_080 0.1740073584 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
20 Hb_000260_610 0.1743073582 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]

Gene co-expression network

sample Hb_003878_060 Hb_003878_060 Hb_006060_010 Hb_006060_010 Hb_003878_060--Hb_006060_010 Hb_003599_060 Hb_003599_060 Hb_003878_060--Hb_003599_060 Hb_014497_070 Hb_014497_070 Hb_003878_060--Hb_014497_070 Hb_006289_020 Hb_006289_020 Hb_003878_060--Hb_006289_020 Hb_012753_150 Hb_012753_150 Hb_003878_060--Hb_012753_150 Hb_007474_020 Hb_007474_020 Hb_003878_060--Hb_007474_020 Hb_006060_010--Hb_012753_150 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_000142_030 Hb_000142_030 Hb_003599_060--Hb_000142_030 Hb_031266_030 Hb_031266_030 Hb_003599_060--Hb_031266_030 Hb_003599_060--Hb_012753_150 Hb_003599_060--Hb_014497_070 Hb_003599_060--Hb_006060_010 Hb_010705_040 Hb_010705_040 Hb_014497_070--Hb_010705_040 Hb_011360_130 Hb_011360_130 Hb_014497_070--Hb_011360_130 Hb_001755_040 Hb_001755_040 Hb_014497_070--Hb_001755_040 Hb_002205_180 Hb_002205_180 Hb_014497_070--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_014497_070--Hb_002232_310 Hb_000441_210 Hb_000441_210 Hb_014497_070--Hb_000441_210 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_000236_480 Hb_000236_480 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_000388_040 Hb_000388_040 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_010267_020 Hb_010267_020 Hb_012753_150--Hb_010267_020 Hb_101133_050 Hb_101133_050 Hb_007474_020--Hb_101133_050 Hb_001390_040 Hb_001390_040 Hb_007474_020--Hb_001390_040 Hb_000856_390 Hb_000856_390 Hb_007474_020--Hb_000856_390 Hb_001307_150 Hb_001307_150 Hb_007474_020--Hb_001307_150 Hb_000317_120 Hb_000317_120 Hb_007474_020--Hb_000317_120 Hb_118282_020 Hb_118282_020 Hb_007474_020--Hb_118282_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0139828 0.108029 0.796853 0.393658 0.0210951 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0201608 0.0381059 0.0562114 0.0424545

CAGE analysis