Hb_003878_070

Information

Type -
Description -
Location Contig3878: 69891-80461
Sequence    

Annotation

kegg
ID rcu:RCOM_0105730
description rab3 gtpase-activating protein non-catalytic subunit, putative
nr
ID XP_012075808.1
description PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
swissprot
ID Q8BMG7
description Rab3 GTPase-activating protein non-catalytic subunit OS=Mus musculus GN=Rab3gap2 PE=1 SV=2
trembl
ID A0A067KR80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10550 PE=4 SV=1
Gene Ontology
ID GO:0043087
description rab3 gtpase-activating protein non-catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38894: 70122-74283 , PASA_asmbl_38895: 81099-81986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_070 0.0 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
2 Hb_007575_050 0.0509762098 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
3 Hb_000334_280 0.0531877795 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
4 Hb_110291_010 0.0561739173 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007054_060 0.0564775124 - - -
6 Hb_003525_010 0.0604437854 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
7 Hb_003125_120 0.0609791146 - - PREDICTED: TITAN-like protein [Jatropha curcas]
8 Hb_023386_020 0.0655119725 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
9 Hb_004412_010 0.0667809922 - - -
10 Hb_000403_050 0.06784305 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
11 Hb_003025_110 0.068363778 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
12 Hb_156973_010 0.0690814089 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000225_040 0.0691665163 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
14 Hb_167498_010 0.0701434153 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
15 Hb_001258_090 0.0715238793 - - PREDICTED: protein spt2-like [Jatropha curcas]
16 Hb_023386_040 0.0722773284 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
17 Hb_007416_340 0.0728138613 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002518_280 0.0730415616 - - phosphate transporter [Manihot esculenta]
19 Hb_000038_170 0.073197922 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
20 Hb_000926_190 0.0751420873 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003878_070 Hb_003878_070 Hb_007575_050 Hb_007575_050 Hb_003878_070--Hb_007575_050 Hb_000334_280 Hb_000334_280 Hb_003878_070--Hb_000334_280 Hb_110291_010 Hb_110291_010 Hb_003878_070--Hb_110291_010 Hb_007054_060 Hb_007054_060 Hb_003878_070--Hb_007054_060 Hb_003525_010 Hb_003525_010 Hb_003878_070--Hb_003525_010 Hb_003125_120 Hb_003125_120 Hb_003878_070--Hb_003125_120 Hb_000225_040 Hb_000225_040 Hb_007575_050--Hb_000225_040 Hb_004954_070 Hb_004954_070 Hb_007575_050--Hb_004954_070 Hb_003025_110 Hb_003025_110 Hb_007575_050--Hb_003025_110 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004412_010 Hb_004412_010 Hb_007575_050--Hb_004412_010 Hb_000334_280--Hb_003125_120 Hb_000334_280--Hb_003525_010 Hb_000403_050 Hb_000403_050 Hb_000334_280--Hb_000403_050 Hb_000484_030 Hb_000484_030 Hb_000334_280--Hb_000484_030 Hb_000215_110 Hb_000215_110 Hb_000334_280--Hb_000215_110 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_004143_060 Hb_004143_060 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020 Hb_000926_190 Hb_000926_190 Hb_007054_060--Hb_000926_190 Hb_001258_090 Hb_001258_090 Hb_007054_060--Hb_001258_090 Hb_023386_040 Hb_023386_040 Hb_007054_060--Hb_023386_040 Hb_000179_030 Hb_000179_030 Hb_007054_060--Hb_000179_030 Hb_023386_020 Hb_023386_020 Hb_007054_060--Hb_023386_020 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_003525_010--Hb_000215_110 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_008453_140 Hb_008453_140 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90584 2.99858 2.09872 2.16678 3.30132 4.55087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61063 4.26103 2.37856 3.32641 3.07498

CAGE analysis