Hb_003878_090

Information

Type -
Description -
Location Contig3878: 83842-91725
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40100g
description hypothetical protein
nr
ID XP_012075810.1
description PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
swissprot
ID Q84JE8
description Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP PE=1 SV=1
trembl
ID U5GSY9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40100g PE=4 SV=1
Gene Ontology
ID GO:0003677
description polynucleotide 3 -phosphatase zdp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38897: 83842-91617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_090 0.0 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
2 Hb_000976_120 0.0584080526 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
3 Hb_003861_060 0.0615790636 - - PREDICTED: treacle protein [Jatropha curcas]
4 Hb_000069_720 0.0631396504 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
5 Hb_014834_150 0.0673990849 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000840_200 0.0688702653 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
7 Hb_133702_010 0.0699713888 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_004545_110 0.0700317792 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
9 Hb_000928_070 0.0703995208 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
10 Hb_023371_020 0.0713487018 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
11 Hb_000080_130 0.0723909661 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
12 Hb_006132_090 0.0725699061 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
13 Hb_012022_040 0.0727255698 - - Protein SIS1, putative [Ricinus communis]
14 Hb_000375_350 0.0734538761 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
15 Hb_062226_130 0.0738354266 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
16 Hb_003582_060 0.0748833391 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
17 Hb_005588_080 0.0750006834 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
18 Hb_013575_010 0.0750086786 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
19 Hb_003428_010 0.0751191415 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
20 Hb_003513_010 0.0753271202 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003878_090 Hb_003878_090 Hb_000976_120 Hb_000976_120 Hb_003878_090--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_003878_090--Hb_003861_060 Hb_000069_720 Hb_000069_720 Hb_003878_090--Hb_000069_720 Hb_014834_150 Hb_014834_150 Hb_003878_090--Hb_014834_150 Hb_000840_200 Hb_000840_200 Hb_003878_090--Hb_000840_200 Hb_133702_010 Hb_133702_010 Hb_003878_090--Hb_133702_010 Hb_001472_100 Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003647_140 Hb_003647_140 Hb_000976_120--Hb_003647_140 Hb_002641_060 Hb_002641_060 Hb_000976_120--Hb_002641_060 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_003861_060--Hb_014834_150 Hb_004052_080 Hb_004052_080 Hb_003861_060--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_003861_060--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_003861_060--Hb_003513_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000069_720--Hb_000840_200 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_014834_150--Hb_003647_140 Hb_014834_150--Hb_003428_010 Hb_014834_150--Hb_004052_080 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_004452_120 Hb_004452_120 Hb_133702_010--Hb_004452_120 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3337 12.0307 18.8953 18.8147 9.32972 12.044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2461 19.8715 13.8163 12.8487 17.9275

CAGE analysis