Hb_003878_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3878: 92692-96185
Sequence    

Annotation

kegg
ID tcc:TCM_040705
description LRR and NB-ARC domains-containing disease resistance protein, putative
nr
ID XP_007015058.1
description LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A061GU66
description LRR and NB-ARC domains-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_040705 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38898: 96049-96931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_100 0.0 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
2 Hb_001623_470 0.1278722436 - - ammonium transporter, putative [Ricinus communis]
3 Hb_002740_170 0.1408685157 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
4 Hb_000203_060 0.1460239859 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
5 Hb_001709_070 0.147531648 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_001769_030 0.1481082731 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
7 Hb_000512_040 0.1482877833 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_029508_030 0.1623794375 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
9 Hb_001252_040 0.1650831703 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
10 Hb_004162_040 0.1652893837 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
11 Hb_124385_010 0.1667461941 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
12 Hb_006938_010 0.1685007948 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_001266_020 0.1696320625 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
14 Hb_001331_040 0.170244625 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
15 Hb_000254_040 0.1703579872 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
16 Hb_000221_170 0.1764925729 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
17 Hb_002686_390 0.177085146 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
18 Hb_000521_300 0.1776996678 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000381_030 0.1797014624 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
20 Hb_000254_150 0.1797463436 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003878_100 Hb_003878_100 Hb_001623_470 Hb_001623_470 Hb_003878_100--Hb_001623_470 Hb_002740_170 Hb_002740_170 Hb_003878_100--Hb_002740_170 Hb_000203_060 Hb_000203_060 Hb_003878_100--Hb_000203_060 Hb_001709_070 Hb_001709_070 Hb_003878_100--Hb_001709_070 Hb_001769_030 Hb_001769_030 Hb_003878_100--Hb_001769_030 Hb_000512_040 Hb_000512_040 Hb_003878_100--Hb_000512_040 Hb_001355_110 Hb_001355_110 Hb_001623_470--Hb_001355_110 Hb_001623_470--Hb_001769_030 Hb_000489_020 Hb_000489_020 Hb_001623_470--Hb_000489_020 Hb_005333_100 Hb_005333_100 Hb_001623_470--Hb_005333_100 Hb_001266_020 Hb_001266_020 Hb_001623_470--Hb_001266_020 Hb_000976_060 Hb_000976_060 Hb_001623_470--Hb_000976_060 Hb_040963_010 Hb_040963_010 Hb_002740_170--Hb_040963_010 Hb_005618_110 Hb_005618_110 Hb_002740_170--Hb_005618_110 Hb_000254_150 Hb_000254_150 Hb_002740_170--Hb_000254_150 Hb_148121_030 Hb_148121_030 Hb_002740_170--Hb_148121_030 Hb_001675_130 Hb_001675_130 Hb_002740_170--Hb_001675_130 Hb_120268_010 Hb_120268_010 Hb_000203_060--Hb_120268_010 Hb_004162_040 Hb_004162_040 Hb_000203_060--Hb_004162_040 Hb_000203_060--Hb_148121_030 Hb_000203_060--Hb_001709_070 Hb_000203_060--Hb_001623_470 Hb_000203_060--Hb_001769_030 Hb_001709_070--Hb_004162_040 Hb_124385_010 Hb_124385_010 Hb_001709_070--Hb_124385_010 Hb_008503_020 Hb_008503_020 Hb_001709_070--Hb_008503_020 Hb_000221_170 Hb_000221_170 Hb_001709_070--Hb_000221_170 Hb_029508_030 Hb_029508_030 Hb_001709_070--Hb_029508_030 Hb_001709_070--Hb_001623_470 Hb_001769_030--Hb_000489_020 Hb_152718_010 Hb_152718_010 Hb_001769_030--Hb_152718_010 Hb_001769_030--Hb_005333_100 Hb_001769_030--Hb_001355_110 Hb_000512_040--Hb_000221_170 Hb_000876_050 Hb_000876_050 Hb_000512_040--Hb_000876_050 Hb_000512_040--Hb_029508_030 Hb_011174_100 Hb_011174_100 Hb_000512_040--Hb_011174_100 Hb_000512_040--Hb_001709_070 Hb_000512_040--Hb_004162_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.873556 0.219663 0.0449968 0 0.0227023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0143023 0.0450195 0 1.25428 0.240192

CAGE analysis