Hb_003878_130

Information

Type -
Description -
Location Contig3878: 106635-107193
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_130 0.0 - - -
2 Hb_001006_080 0.0530843508 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
3 Hb_000908_030 0.0735442224 - - small heat-shock protein, putative [Ricinus communis]
4 Hb_001976_070 0.0809823194 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
5 Hb_000696_120 0.0849688784 - - PREDICTED: protein FD [Populus euphratica]
6 Hb_179367_020 0.086329515 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_001518_050 0.0897569173 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_010080_040 0.1012549614 - - conserved hypothetical protein [Ricinus communis]
9 Hb_174829_030 0.1066395864 - - conserved hypothetical protein [Ricinus communis]
10 Hb_157881_010 0.1067890795 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_004342_040 0.1068371747 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
12 Hb_185437_010 0.1079259586 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
13 Hb_000352_020 0.1094987653 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
14 Hb_004899_380 0.1109985923 - - conserved hypothetical protein [Ricinus communis]
15 Hb_104362_020 0.111193934 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_000025_800 0.1148662959 - - hypothetical protein VITISV_020143 [Vitis vinifera]
17 Hb_151027_010 0.1188652479 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
18 Hb_048987_020 0.1189973102 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
19 Hb_005428_010 0.1221214491 - - cytochrome P450, putative [Ricinus communis]
20 Hb_179367_010 0.1241512537 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_003878_130 Hb_003878_130 Hb_001006_080 Hb_001006_080 Hb_003878_130--Hb_001006_080 Hb_000908_030 Hb_000908_030 Hb_003878_130--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_003878_130--Hb_001976_070 Hb_000696_120 Hb_000696_120 Hb_003878_130--Hb_000696_120 Hb_179367_020 Hb_179367_020 Hb_003878_130--Hb_179367_020 Hb_001518_050 Hb_001518_050 Hb_003878_130--Hb_001518_050 Hb_001006_080--Hb_000696_120 Hb_174829_030 Hb_174829_030 Hb_001006_080--Hb_174829_030 Hb_010080_040 Hb_010080_040 Hb_001006_080--Hb_010080_040 Hb_151027_010 Hb_151027_010 Hb_001006_080--Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_001006_080--Hb_104362_020 Hb_000908_030--Hb_179367_020 Hb_000908_030--Hb_001976_070 Hb_177179_020 Hb_177179_020 Hb_000908_030--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_000908_030--Hb_000025_800 Hb_132880_020 Hb_132880_020 Hb_000908_030--Hb_132880_020 Hb_001976_070--Hb_179367_020 Hb_001976_070--Hb_132880_020 Hb_157881_010 Hb_157881_010 Hb_001976_070--Hb_157881_010 Hb_001152_040 Hb_001152_040 Hb_001976_070--Hb_001152_040 Hb_000696_120--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000696_120--Hb_003216_010 Hb_000696_120--Hb_010080_040 Hb_005057_020 Hb_005057_020 Hb_000696_120--Hb_005057_020 Hb_004342_040 Hb_004342_040 Hb_000696_120--Hb_004342_040 Hb_179367_020--Hb_177179_020 Hb_179367_020--Hb_132880_020 Hb_179367_020--Hb_000025_800 Hb_000483_120 Hb_000483_120 Hb_179367_020--Hb_000483_120 Hb_185437_010 Hb_185437_010 Hb_001518_050--Hb_185437_010 Hb_039440_010 Hb_039440_010 Hb_001518_050--Hb_039440_010 Hb_001518_050--Hb_000025_800 Hb_119583_030 Hb_119583_030 Hb_001518_050--Hb_119583_030 Hb_010252_010 Hb_010252_010 Hb_001518_050--Hb_010252_010 Hb_160950_010 Hb_160950_010 Hb_001518_050--Hb_160950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0641738 0.142785 0.402036 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis