Hb_003878_140

Information

Type transcription factor
Description TF Family: TUB
Location Contig3878: 109551-114333
Sequence    

Annotation

kegg
ID rcu:RCOM_0107210
description hypothetical protein
nr
ID XP_012075824.1
description PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
swissprot
ID Q93VI8
description Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1
trembl
ID A0A067KFB3
description Tubby-like F-box protein OS=Jatropha curcas GN=JCGZ_10577 PE=3 SV=1
Gene Ontology
ID GO:0005515
description tubby-like f-box protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38903: 110069-114326 , PASA_asmbl_38904: 109658-114326 , PASA_asmbl_38906: 113182-113359
cDNA
(Sanger)
(ID:Location)		 012_L23.ab1: 110692-114311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_140 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
2 Hb_000224_060 0.0442491807 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
3 Hb_002977_010 0.0595626077 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
4 Hb_001616_050 0.06055276 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
5 Hb_001584_170 0.0715888662 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_000865_080 0.0784875713 - - arsenite-resistance protein, putative [Ricinus communis]
7 Hb_017075_030 0.0795889246 - - helicase, putative [Ricinus communis]
8 Hb_000291_190 0.0816647915 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
9 Hb_000032_320 0.0836613516 - - protein binding protein, putative [Ricinus communis]
10 Hb_063100_010 0.084600269 - - TATA box-binding protein-associated factor [Populus trichocarpa]
11 Hb_000140_080 0.0861671329 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
12 Hb_000406_240 0.0871949203 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
13 Hb_003020_110 0.0878303412 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
14 Hb_001946_300 0.0887494856 - - PREDICTED: F-box protein At-B [Jatropha curcas]
15 Hb_023827_040 0.090150544 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
16 Hb_032202_240 0.0903494743 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
17 Hb_002813_010 0.0907669344 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_002301_220 0.0910601982 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
19 Hb_003656_160 0.0918927027 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
20 Hb_003126_030 0.0934725164 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003878_140 Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_003878_140--Hb_000224_060 Hb_002977_010 Hb_002977_010 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_000291_190 Hb_000291_190 Hb_000224_060--Hb_000291_190 Hb_000224_060--Hb_000865_080 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000025_360 Hb_000025_360 Hb_000224_060--Hb_000025_360 Hb_000224_060--Hb_001616_050 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_007229_040 Hb_007229_040 Hb_001616_050--Hb_007229_040 Hb_001946_300 Hb_001946_300 Hb_001616_050--Hb_001946_300 Hb_001616_050--Hb_032202_240 Hb_001584_170--Hb_000865_080 Hb_004734_060 Hb_004734_060 Hb_001584_170--Hb_004734_060 Hb_001584_170--Hb_000224_060 Hb_012395_160 Hb_012395_160 Hb_001584_170--Hb_012395_160 Hb_001584_170--Hb_002977_010 Hb_000865_080--Hb_000291_190 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_017075_030--Hb_001946_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
166.554 136.647 47.0102 29.6576 137.731 142.75
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.198 67.0138 72.555 43.6596 23.7495

CAGE analysis