Hb_003878_150

Information

Type -
Description -
Location Contig3878: 115593-121633
Sequence    

Annotation

kegg
ID rcu:RCOM_1760420
description glycosyltransferase, putative
nr
ID XP_012075822.1
description PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
swissprot
ID Q1LZA0
description GPI mannosyltransferase 3 OS=Bos taurus GN=PIGB PE=2 SV=1
trembl
ID A0A067KSJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10574 PE=4 SV=1
Gene Ontology
ID GO:0016757
description gpi mannosyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38907: 116264-120565 , PASA_asmbl_38908: 120624-121506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_150 0.0 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
2 Hb_109000_020 0.0511691401 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
3 Hb_005725_130 0.0534377882 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
4 Hb_001662_100 0.069696041 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
5 Hb_000256_150 0.0697794457 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
6 Hb_003883_060 0.071882722 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
7 Hb_001195_400 0.0726324169 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
8 Hb_005976_080 0.0742840557 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
9 Hb_005800_030 0.075227099 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
10 Hb_041290_020 0.0760459909 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
11 Hb_133702_010 0.0771452658 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_008616_050 0.0771518623 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
13 Hb_000787_160 0.0777363877 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
14 Hb_009569_040 0.0781556958 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
15 Hb_015675_040 0.0784537503 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
16 Hb_011224_050 0.0784934108 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
17 Hb_004705_170 0.0788498913 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
18 Hb_027073_020 0.0800552701 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
19 Hb_001242_120 0.0802016251 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
20 Hb_000087_070 0.0802462482 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_003878_150 Hb_003878_150 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_001662_100 Hb_001662_100 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_001195_400 Hb_001195_400 Hb_003878_150--Hb_001195_400 Hb_009328_020 Hb_009328_020 Hb_109000_020--Hb_009328_020 Hb_001232_190 Hb_001232_190 Hb_109000_020--Hb_001232_190 Hb_008616_050 Hb_008616_050 Hb_109000_020--Hb_008616_050 Hb_109000_020--Hb_001662_100 Hb_041290_020 Hb_041290_020 Hb_109000_020--Hb_041290_020 Hb_001242_120 Hb_001242_120 Hb_005725_130--Hb_001242_120 Hb_009569_040 Hb_009569_040 Hb_005725_130--Hb_009569_040 Hb_000120_370 Hb_000120_370 Hb_005725_130--Hb_000120_370 Hb_002928_090 Hb_002928_090 Hb_005725_130--Hb_002928_090 Hb_005725_130--Hb_001662_100 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000256_150--Hb_000300_270 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_001301_150 Hb_001301_150 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71518 1.44547 2.57677 3.82032 1.54894 2.45285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00626 2.57013 1.72109 2.8697 3.49407

CAGE analysis