Hb_003878_190

Information

Type -
Description -
Location Contig3878: 135851-137773
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11040g
description POPTRDRAFT_568798; hypothetical protein
nr
ID XP_002316854.1
description hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I1S9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11040g PE=4 SV=1
Gene Ontology
ID GO:0005739
description hypothetical protein POPTR_0011s11040g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38909: 136679-137039 , PASA_asmbl_38910: 124986-137694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_190 0.0 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
2 Hb_003001_060 0.0552770576 - - wound-responsive family protein [Populus trichocarpa]
3 Hb_001824_070 0.0596309183 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
4 Hb_000392_270 0.064968586 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_000928_240 0.0689270253 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
6 Hb_009711_030 0.0711863181 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
7 Hb_000977_080 0.0736197485 - - type II inositol 5-phosphatase, putative [Ricinus communis]
8 Hb_002893_060 0.0740005297 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
9 Hb_000154_080 0.0746020053 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
10 Hb_003551_020 0.0752757422 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
11 Hb_009767_120 0.077929679 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
12 Hb_001477_110 0.0784728106 - - prohibitin, putative [Ricinus communis]
13 Hb_002477_240 0.0785774774 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
14 Hb_001828_090 0.0789754036 - - prohibitin, putative [Ricinus communis]
15 Hb_001369_650 0.079274044 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
16 Hb_002107_130 0.0807401297 - - protein with unknown function [Ricinus communis]
17 Hb_001951_110 0.0809341288 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
18 Hb_000933_180 0.0823362877 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
19 Hb_000703_140 0.0838626768 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
20 Hb_011360_140 0.0847193828 - - 40S ribosomal protein S19, putative [Ricinus communis]

Gene co-expression network

sample Hb_003878_190 Hb_003878_190 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_001824_070 Hb_001824_070 Hb_003878_190--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_000392_270--Hb_000977_080 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_000928_240--Hb_001824_070 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_022250_040 Hb_022250_040 Hb_009711_030--Hb_022250_040 Hb_009711_030--Hb_125000_010 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_009711_030--Hb_002097_110 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.4871 10.8877 10.1336 11.6333 42.886 34.8829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6073 60.6404 24.165 17.2459 6.72258

CAGE analysis