Hb_003878_200

Information

Type -
Description -
Location Contig3878: 139587-152588
Sequence    

Annotation

kegg
ID rcu:RCOM_1104310
description ATP synthase subunit d, putative (EC:3.6.3.14)
nr
ID XP_012075819.1
description PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
swissprot
ID Q9XGM1
description V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2
trembl
ID A0A067KFA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10572 PE=4 SV=1
Gene Ontology
ID GO:0042626
description v-type proton atpase subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38911: 143977-155089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_200 0.0 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
2 Hb_000389_030 0.0814047147 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
3 Hb_004126_040 0.0823023937 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000665_170 0.0832251614 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
5 Hb_000256_230 0.0842513104 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
6 Hb_002928_090 0.0850163517 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
7 Hb_003998_040 0.0856692665 - - organic anion transporter, putative [Ricinus communis]
8 Hb_000390_050 0.0882891449 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
9 Hb_002902_130 0.0962664274 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
10 Hb_011310_110 0.0991030604 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
11 Hb_000903_010 0.0993232314 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
12 Hb_002226_080 0.1004806165 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
13 Hb_010672_020 0.1009731476 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
14 Hb_009661_030 0.1013772248 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
15 Hb_004994_020 0.1015338971 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
16 Hb_014361_060 0.1015916446 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
17 Hb_000622_110 0.1019194715 - - cmp-sialic acid transporter, putative [Ricinus communis]
18 Hb_001051_050 0.1030631664 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001633_080 0.1031132434 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
20 Hb_002740_080 0.1034518141 - - flap endonuclease-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003878_200 Hb_003878_200 Hb_000389_030 Hb_000389_030 Hb_003878_200--Hb_000389_030 Hb_004126_040 Hb_004126_040 Hb_003878_200--Hb_004126_040 Hb_000665_170 Hb_000665_170 Hb_003878_200--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_003878_200--Hb_000256_230 Hb_002928_090 Hb_002928_090 Hb_003878_200--Hb_002928_090 Hb_003998_040 Hb_003998_040 Hb_003878_200--Hb_003998_040 Hb_000389_030--Hb_000256_230 Hb_001021_010 Hb_001021_010 Hb_000389_030--Hb_001021_010 Hb_000389_030--Hb_004126_040 Hb_000389_030--Hb_000665_170 Hb_004525_040 Hb_004525_040 Hb_000389_030--Hb_004525_040 Hb_000009_060 Hb_000009_060 Hb_000389_030--Hb_000009_060 Hb_004126_040--Hb_000256_230 Hb_004126_040--Hb_000665_170 Hb_003209_130 Hb_003209_130 Hb_004126_040--Hb_003209_130 Hb_000622_110 Hb_000622_110 Hb_004126_040--Hb_000622_110 Hb_000665_170--Hb_000256_230 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_000256_230--Hb_003209_130 Hb_000256_230--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_000256_230--Hb_002486_050 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_002928_090--Hb_001051_050 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040 Hb_000066_030 Hb_000066_030 Hb_003998_040--Hb_000066_030 Hb_005218_020 Hb_005218_020 Hb_003998_040--Hb_005218_020 Hb_011214_160 Hb_011214_160 Hb_003998_040--Hb_011214_160 Hb_007765_040 Hb_007765_040 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_000371_090 Hb_000371_090 Hb_003998_040--Hb_000371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.78037 5.64849 10.4873 23.1835 6.78686 6.64904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62343 7.99245 4.69813 9.74108 12.9805

CAGE analysis